2p3e

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[[Image:2p3e.gif|left|200px]]
 
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{{Structure
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==Crystal structure of AQ1208 from Aquifex aeolicus==
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|PDB= 2p3e |SIZE=350|CAPTION= <scene name='initialview01'>2p3e</scene>, resolution 1.99&Aring;
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<StructureSection load='2p3e' size='340' side='right'caption='[[2p3e]], [[Resolution|resolution]] 1.99&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND=
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<table><tr><td colspan='2'>[[2p3e]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus_VF5 Aquifex aeolicus VF5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P3E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P3E FirstGlance]. <br>
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|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Diaminopimelate_decarboxylase Diaminopimelate decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.20 4.1.1.20] </span>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.99&#8491;</td></tr>
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|GENE= lysA, aq_1208 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 Aquifex aeolicus])
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p3e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p3e OCA], [https://pdbe.org/2p3e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p3e RCSB], [https://www.ebi.ac.uk/pdbsum/2p3e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p3e ProSAT], [https://www.topsan.org/Proteins/RSGI/2p3e TOPSAN]</span></td></tr>
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|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG0019 LysA], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00278 Orn_DAP_Arg_deC], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam01168 Ala_racemase_N]</span>
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</table>
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|RELATEDENTRY=[[1twi|1TWI]]
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== Function ==
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p3e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p3e OCA], [http://www.ebi.ac.uk/pdbsum/2p3e PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2p3e RCSB]</span>
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[https://www.uniprot.org/uniprot/DCDA_AQUAE DCDA_AQUAE] Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine (By similarity).[HAMAP-Rule:MF_02120]
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}}
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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'''Crystal structure of AQ1208 from Aquifex aeolicus'''
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p3/2p3e_consurf.spt"</scriptWhenChecked>
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==About this Structure==
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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2P3E is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P3E OCA].
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Aquifex aeolicus]]
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</jmolCheckbox>
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[[Category: Diaminopimelate decarboxylase]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p3e ConSurf].
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[[Category: Single protein]]
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<div style="clear:both"></div>
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[[Category: Chen, L.]]
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__TOC__
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[[Category: Ebihara, A.]]
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</StructureSection>
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[[Category: Fu, Z-Q.]]
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[[Category: Aquifex aeolicus VF5]]
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[[Category: II, J T.Swindell.]]
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[[Category: Large Structures]]
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[[Category: Kuramitsu, S.]]
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[[Category: Chen L]]
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[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
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[[Category: Ebihara A]]
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[[Category: Rose, J P.]]
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[[Category: Fu Z-Q]]
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[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
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[[Category: Kuramitsu S]]
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[[Category: Shinkai, A.]]
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[[Category: Rose JP]]
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[[Category: Wang, B-C.]]
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[[Category: Shinkai A]]
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[[Category: Yokoyama, S.]]
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[[Category: Swindell II JT]]
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[[Category: Zhu, J.]]
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[[Category: Wang B-C]]
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[[Category: aq1208]]
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[[Category: Yokoyama S]]
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[[Category: aquifex aeolicus]]
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[[Category: Zhu J]]
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[[Category: department of biological sciences osaka university]]
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[[Category: department of biophysics and biochemistry university of tokyo]]
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[[Category: protein structure initiative]]
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[[Category: psi]]
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[[Category: riken genomic sciences center]]
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[[Category: riken spring-8 center]]
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[[Category: riken structural genomics/proteomics initiative]]
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[[Category: rsgi]]
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[[Category: secsg]]
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[[Category: southeast collaboratory for structural genomic]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:28:17 2008''
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Current revision

Crystal structure of AQ1208 from Aquifex aeolicus

PDB ID 2p3e

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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