6hbz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "6hbz" [edit=sysop:move=sysop])
Current revision (07:52, 6 November 2019) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 6hbz is ON HOLD
+
==Bdellovibrio bacteriovorus DgcB Full-length==
 +
<StructureSection load='6hbz' size='340' side='right'caption='[[6hbz]], [[Resolution|resolution]] 1.79&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[6hbz]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bdeba Bdeba]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6HBZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6HBZ FirstGlance]. <br>
 +
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=C2E:9,9-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d 3,2-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)'>C2E</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
 +
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Bd0742 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=264462 BDEBA])</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6hbz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6hbz OCA], [http://pdbe.org/6hbz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6hbz RCSB], [http://www.ebi.ac.uk/pdbsum/6hbz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6hbz ProSAT]</span></td></tr>
 +
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The bacterial second messenger cyclic-di-GMP is a widespread, prominent effector of lifestyle change. An example of this occurs in the predatory bacterium Bdellovibrio bacteriovorus, which cycles between free-living and intraperiplasmic phases after entering (and killing) another bacterium. The initiation of prey invasion is governed by DgcB (GGDEF enzyme) that produces cyclic-di-GMP in response to an unknown stimulus. Here, we report the structure of DgcB, and demonstrate that the GGDEF and sensory forkhead-associated (FHA) domains form an asymmetric dimer. Our structures indicate that the FHA domain is a consensus phosphopeptide sensor, and that the ligand for activation is surprisingly derived from the N-terminal region of DgcB itself. We confirm this hypothesis by determining the structure of a FHA:phosphopeptide complex, from which we design a constitutively-active mutant (confirmed via enzyme assays). Our results provide an understanding of the stimulus driving DgcB-mediated prey invasion and detail a unique mechanism of GGDEF enzyme regulation.
-
Authors: Lovering, A.L., Meek, R.W.
+
Structural basis for activation of a diguanylate cyclase required for bacterial predation in Bdellovibrio.,Meek RW, Cadby IT, Moynihan PJ, Lovering AL Nat Commun. 2019 Sep 9;10(1):4086. doi: 10.1038/s41467-019-12051-6. PMID:31501441<ref>PMID:31501441</ref>
-
Description: Bdellovibrio bacteriovorus DgcB Full-length
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Lovering, A.L]]
+
<div class="pdbe-citations 6hbz" style="background-color:#fffaf0;"></div>
-
[[Category: Meek, R.W]]
+
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Bdeba]]
 +
[[Category: Large Structures]]
 +
[[Category: Lovering, A L]]
 +
[[Category: Meek, R W]]
 +
[[Category: C-di-gmp]]
 +
[[Category: Diguanylate cyclase]]
 +
[[Category: Fha]]
 +
[[Category: Ggdef]]
 +
[[Category: Signaling protein]]

Current revision

Bdellovibrio bacteriovorus DgcB Full-length

PDB ID 6hbz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools