2p5z

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:08, 21 February 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2p5z.jpg|left|200px]]
 
-
{{Structure
+
==The E. coli c3393 protein is a component of the type VI secretion system and exhibits structural similarity to T4 bacteriophage tail proteins gp27 and gp5==
-
|PDB= 2p5z |SIZE=350|CAPTION= <scene name='initialview01'>2p5z</scene>, resolution 2.60&Aring;
+
<StructureSection load='2p5z' size='340' side='right'caption='[[2p5z]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[2p5z]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_O6 Escherichia coli O6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P5Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P5Z FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-
|GENE= c3393 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=217992 Escherichia coli O6])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p5z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p5z OCA], [https://pdbe.org/2p5z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p5z RCSB], [https://www.ebi.ac.uk/pdbsum/2p5z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p5z ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2p5z TOPSAN]</span></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam04524 DUF586], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3501 VgrG]</span>
+
</table>
-
|RELATEDENTRY=
+
== Function ==
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p5z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p5z OCA], [http://www.ebi.ac.uk/pdbsum/2p5z PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2p5z RCSB]</span>
+
[https://www.uniprot.org/uniprot/A0A0H2VBP9_ECOL6 A0A0H2VBP9_ECOL6]
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''Crystal structure of the N-terminal domain of E. coli CFT073 c3393, including Pfam DUF586'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p5/2p5z_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
2P5Z is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_o6 Escherichia coli o6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P5Z OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Escherichia coli o6]]
+
</jmolCheckbox>
-
[[Category: Single protein]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p5z ConSurf].
-
[[Category: Almo, S C.]]
+
<div style="clear:both"></div>
-
[[Category: Bonanno, J B.]]
+
__TOC__
-
[[Category: Burley, S K.]]
+
</StructureSection>
-
[[Category: Freeman, J C.]]
+
[[Category: Escherichia coli O6]]
-
[[Category: Gheyi, T.]]
+
[[Category: Large Structures]]
-
[[Category: Lau, C.]]
+
[[Category: Almo SC]]
-
[[Category: Maletic, M.]]
+
[[Category: Bonanno JB]]
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
[[Category: Burley SK]]
-
[[Category: Ramagopal, U A.]]
+
[[Category: Freeman JC]]
-
[[Category: Sauder, J M.]]
+
[[Category: Gheyi T]]
-
[[Category: Sridhar, V.]]
+
[[Category: Lau C]]
-
[[Category: Toro, R.]]
+
[[Category: Maletic M]]
-
[[Category: new york structural genomix research consortium]]
+
[[Category: Ramagopal UA]]
-
[[Category: nysgxrc]]
+
[[Category: Sauder JM]]
-
[[Category: protein structure initiative]]
+
[[Category: Sridhar V]]
-
[[Category: psi-2]]
+
[[Category: Toro R]]
-
[[Category: structural genomic]]
+
-
[[Category: unknown function]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:30:25 2008''
+

Current revision

The E. coli c3393 protein is a component of the type VI secretion system and exhibits structural similarity to T4 bacteriophage tail proteins gp27 and gp5

PDB ID 2p5z

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2p5z"
Personal tools