This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2p68

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:55, 30 August 2023) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2p68.gif|left|200px]]
 
-
{{Structure
+
==Crystal Structure of aq_1716 from Aquifex Aeolicus VF5==
-
|PDB= 2p68 |SIZE=350|CAPTION= <scene name='initialview01'>2p68</scene>, resolution 1.840&Aring;
+
<StructureSection load='2p68' size='340' side='right'caption='[[2p68]], [[Resolution|resolution]] 1.84&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[2p68]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus_VF5 Aquifex aeolicus VF5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P68 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P68 FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/3-oxoacyl-[acyl-carrier-protein]_reductase 3-oxoacyl-[acyl-carrier-protein] reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.100 1.1.1.100] </span>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.84&#8491;</td></tr>
-
|GENE= fabG, aq_1716 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 Aquifex aeolicus])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p68 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p68 OCA], [https://pdbe.org/2p68 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p68 RCSB], [https://www.ebi.ac.uk/pdbsum/2p68 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p68 ProSAT], [https://www.topsan.org/Proteins/RSGI/2p68 TOPSAN]</span></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK12825 fabG], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK05557 fabG]</span>
+
</table>
-
|RELATEDENTRY=
+
== Function ==
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p68 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p68 OCA], [http://www.ebi.ac.uk/pdbsum/2p68 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2p68 RCSB]</span>
+
[https://www.uniprot.org/uniprot/FABG_AQUAE FABG_AQUAE] Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis (By similarity).
-
}}
+
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p6/2p68_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p68 ConSurf].
 +
<div style="clear:both"></div>
-
'''Crystal Structure of aq_1716 from Aquifex Aeolicus VF5'''
+
==See Also==
-
 
+
*[[Beta-ketoacyl carrier protein reductase 3D structures|Beta-ketoacyl carrier protein reductase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
2P68 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P68 OCA].
+
[[Category: Aquifex aeolicus VF5]]
-
[[Category: 3-oxoacyl-[acyl-carrier-protein] reductase]]
+
[[Category: Large Structures]]
-
[[Category: Aquifex aeolicus]]
+
[[Category: Chen L]]
-
[[Category: Single protein]]
+
[[Category: Chen L-Q]]
-
[[Category: Chen, L-Q.]]
+
[[Category: Dillard B]]
-
[[Category: Chen, L.]]
+
[[Category: Ebihara A]]
-
[[Category: Dillard, B.]]
+
[[Category: Kuramitsu S]]
-
[[Category: Ebihara, A.]]
+
[[Category: Rose JP]]
-
[[Category: Kuramitsu, S.]]
+
[[Category: Shinkai A]]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[[Category: Wang B-C]]
-
[[Category: Rose, J P.]]
+
[[Category: Yokoyama S]]
-
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
+
[[Category: Zhao M]]
-
[[Category: Shinkai, A.]]
+
-
[[Category: Wang, B-C.]]
+
-
[[Category: Yokoyama, S.]]
+
-
[[Category: Zhao, M.]]
+
-
[[Category: 3-ketoacyl-acyl carrier protein reductase]]
+
-
[[Category: aq_1716]]
+
-
[[Category: aquifex aeolicus vf5]]
+
-
[[Category: national project on protein structural and functional analyse]]
+
-
[[Category: nppsfa]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi]]
+
-
[[Category: riken structural genomics/proteomics initiative]]
+
-
[[Category: rsgi]]
+
-
[[Category: secsg]]
+
-
[[Category: southeast collaboratory for structural genomic]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:30:29 2008''
+

Current revision

Crystal Structure of aq_1716 from Aquifex Aeolicus VF5

PDB ID 2p68

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2p68"
Personal tools