2pfw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (01:18, 21 November 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2pfw.gif|left|200px]]
 
-
{{Structure
+
==CRYSTAL STRUCTURE OF A RMLC-LIKE CUPIN (SFRI_3105) FROM SHEWANELLA FRIGIDIMARINA NCIMB 400 AT 1.90 A RESOLUTION==
-
|PDB= 2pfw |SIZE=350|CAPTION= <scene name='initialview01'>2pfw</scene>, resolution 1.900&Aring;
+
<StructureSection load='2pfw' size='340' side='right'caption='[[2pfw]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>[[2pfw]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_frigidimarina_NCIMB_400 Shewanella frigidimarina NCIMB 400]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PFW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PFW FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
|GENE= YP_751781.1, Sfri_3105 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=318167 Shewanella frigidimarina NCIMB 400])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam07883 Cupin_2]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pfw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pfw OCA], [https://pdbe.org/2pfw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pfw RCSB], [https://www.ebi.ac.uk/pdbsum/2pfw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pfw ProSAT], [https://www.topsan.org/Proteins/JCSG/2pfw TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pfw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pfw OCA], [http://www.ebi.ac.uk/pdbsum/2pfw PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2pfw RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/Q07YH2_SHEFN Q07YH2_SHEFN]
-
 
+
== Evolutionary Conservation ==
-
'''Crystal structure of Cupin 2 conserved barrel domain protein (YP_751781.1) from Shewanella frigidimarina NCIMB 400 at 1.90 A resolution'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pf/2pfw_consurf.spt"</scriptWhenChecked>
-
2PFW is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Shewanella_frigidimarina_ncimb_400 Shewanella frigidimarina ncimb 400]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PFW OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Shewanella frigidimarina ncimb 400]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pfw ConSurf].
-
[[Category: cupin 2 conserved barrel domain protein]]
+
<div style="clear:both"></div>
-
[[Category: cupin domain]]
+
__TOC__
-
[[Category: jcsg]]
+
</StructureSection>
-
[[Category: joint center for structural genomic]]
+
[[Category: Large Structures]]
-
[[Category: protein structure initiative]]
+
[[Category: Shewanella frigidimarina NCIMB 400]]
-
[[Category: psi-2]]
+
-
[[Category: structural genomic]]
+
-
[[Category: twinning]]
+
-
[[Category: yp_751781 1]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:35:19 2008''
+

Current revision

CRYSTAL STRUCTURE OF A RMLC-LIKE CUPIN (SFRI_3105) FROM SHEWANELLA FRIGIDIMARINA NCIMB 400 AT 1.90 A RESOLUTION

PDB ID 2pfw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2pfw"
Personal tools