This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
5fl0
From Proteopedia
(Difference between revisions)
| (One intermediate revision not shown.) | |||
| Line 1: | Line 1: | ||
==Structure of a hydrolase with an inhibitor== | ==Structure of a hydrolase with an inhibitor== | ||
| - | <StructureSection load='5fl0' size='340' side='right' caption='[[5fl0]], [[Resolution|resolution]] 1.95Å' scene=''> | + | <StructureSection load='5fl0' size='340' side='right'caption='[[5fl0]], [[Resolution|resolution]] 1.95Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[5fl0]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[5fl0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron Bacteroides thetaiotaomicron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FL0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5FL0 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=71I:(3~{A}~{R},5~{R},6~{S},7~{R},7~{A}~{R})-2-(BUTYLAMINO)-5-(HYDROXYMETHYL)-5,6,7,7~{A}-TETRAHYDRO-3~{A}~{H}-PYRANO[3,2-D][1,3]THIAZOLE-6,7-DIOL'>71I</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=71I:(3~{A}~{R},5~{R},6~{S},7~{R},7~{A}~{R})-2-(BUTYLAMINO)-5-(HYDROXYMETHYL)-5,6,7,7~{A}-TETRAHYDRO-3~{A}~{H}-PYRANO[3,2-D][1,3]THIAZOLE-6,7-DIOL'>71I</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5fl0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fl0 OCA], [https://pdbe.org/5fl0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5fl0 RCSB], [https://www.ebi.ac.uk/pdbsum/5fl0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5fl0 ProSAT]</span></td></tr> | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/OGA_BACTN OGA_BACTN] Biological function unknown. Capable of hydrolyzing the glycosidic link of O-GlcNAcylated proteins. |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
| Line 20: | Line 19: | ||
</div> | </div> | ||
<div class="pdbe-citations 5fl0" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 5fl0" style="background-color:#fffaf0;"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[O-GlcNAcase|O-GlcNAcase]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Bacteroides thetaiotaomicron]] |
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Cekic | + | [[Category: Cekic N]] |
| - | [[Category: Davies | + | [[Category: Davies GJ]] |
| - | [[Category: Heinonen | + | [[Category: Heinonen JE]] |
| - | [[Category: McEachern | + | [[Category: McEachern EJ]] |
| - | [[Category: Roth | + | [[Category: Roth C]] |
| - | [[Category: Stubbs | + | [[Category: Stubbs KA]] |
| - | [[Category: Vocadlo | + | [[Category: Vocadlo DJ]] |
| - | + | ||
Current revision
Structure of a hydrolase with an inhibitor
| |||||||||||
