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==Activity#1: Model 2== | ==Activity#1: Model 2== | ||
| - | <StructureSection load='Waters-5c.pdb' size=' | + | <StructureSection load='Waters-5c.pdb' size='580' side='right' caption='Model 2' scene='79/795974/Ball-and-stick/1'> |
This structure file in Model 2 represents five water molecules in the liquid state. Use the green links in the text below to view different representations of these water molecules and to help you answer the questions in your Activity #1 handout. | This structure file in Model 2 represents five water molecules in the liquid state. Use the green links in the text below to view different representations of these water molecules and to help you answer the questions in your Activity #1 handout. | ||
== Representations== | == Representations== | ||
| - | The default representation is called <scene name='79/795974/Ball-and-stick/1'>"ball-and-stick"</scene>. | + | The default representation is called <scene name='79/795974/Ball-and-stick/1'>"ball-and-stick"</scene>. |
| - | Another very common representation is known as "spacefill". Explore the different levels of "spacefill" for these molecules including: | + | Another very common representation is known as "spacefill". Explore the different levels of "spacefill" for these molecules including:<scene name='79/795974/Spacefill_20/1'>spacefill 20%</scene>, <scene name='79/795974/Spacefill_50/1'>spacefill 50%</scene>, and <scene name='79/795974/Spacefill_100/1'>spacefill 100%</scene>. |
| - | <scene name='79/795974/Spacefill_20/1'>spacefill 20%</scene>, <scene name='79/795974/Spacefill_50/1'>spacefill 50%</scene>, and <scene name='79/795974/Spacefill_100/1'>spacefill 100%</scene>. | + | |
== Measuring Distances Between Atoms == | == Measuring Distances Between Atoms == | ||
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*Note that if the model gets cluttered, you may want to remove the distance labels. You can do this (and many other things!) by accessing the JSmol menu in the structure window. Hover the cursor inside the structure window, right click (control-click on your macbook), and scroll down to "Measurements" and choose "Delete measurements". You can also use this JSmol window to change the distance units. | *Note that if the model gets cluttered, you may want to remove the distance labels. You can do this (and many other things!) by accessing the JSmol menu in the structure window. Hover the cursor inside the structure window, right click (control-click on your macbook), and scroll down to "Measurements" and choose "Delete measurements". You can also use this JSmol window to change the distance units. | ||
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== Measuring Angles formed by 3 Atoms == | == Measuring Angles formed by 3 Atoms == | ||
Current revision
Activity#1: Model 2
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