This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2pls

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:26, 17 June 2021) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2pls.gif|left|200px]]
 
-
{{Structure
+
==Structural Genomics, the crystal structure of the CorC/HlyC transporter associated domain of a CBS domain protein from Chlorobium tepidum TLS==
-
|PDB= 2pls |SIZE=350|CAPTION= <scene name='initialview01'>2pls</scene>, resolution 2.15&Aring;
+
<StructureSection load='2pls' size='340' side='right'caption='[[2pls]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>[[2pls]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlte Chlte]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PLS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PLS FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
|GENE= CT0541 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=194439 Chlorobium tepidum TLS])
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam03471 CorC_HlyC]</span>
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CT0541 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=194439 CHLTE])</td></tr>
-
|RELATEDENTRY=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pls FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pls OCA], [https://pdbe.org/2pls PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pls RCSB], [https://www.ebi.ac.uk/pdbsum/2pls PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pls ProSAT], [https://www.topsan.org/Proteins/MCSG/2pls TOPSAN]</span></td></tr>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pls FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pls OCA], [http://www.ebi.ac.uk/pdbsum/2pls PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2pls RCSB]</span>
+
</table>
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''Structural Genomics, the crystal structure of the CorC/HlyC transporter associated domain of a CBS domain protein from Chlorobium tepidum TLS'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pl/2pls_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
2PLS is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Chlorobium_tepidum_tls Chlorobium tepidum tls]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PLS OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Chlorobium tepidum tls]]
+
</jmolCheckbox>
-
[[Category: Single protein]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pls ConSurf].
-
[[Category: Clancy, S.]]
+
<div style="clear:both"></div>
-
[[Category: Joachimiak, A.]]
+
__TOC__
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</StructureSection>
-
[[Category: Tan, K.]]
+
[[Category: Chlte]]
-
[[Category: Volkart, L.]]
+
[[Category: Large Structures]]
-
[[Category: apc86064 2]]
+
[[Category: Clancy, S]]
-
[[Category: cbs domain protein]]
+
[[Category: Joachimiak, A]]
-
[[Category: chlorobium tepidum tl]]
+
[[Category: Structural genomic]]
-
[[Category: corc/hlyc transporter associated domain]]
+
[[Category: Tan, K]]
-
[[Category: mcsg]]
+
[[Category: Volkart, L]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Apc86064 2]]
-
[[Category: protein structure initiative]]
+
[[Category: Cbs domain protein]]
-
[[Category: psi-2]]
+
[[Category: Chlorobium tepidum tl]]
-
[[Category: structural genomic]]
+
[[Category: Corc/hlyc transporter associated domain]]
-
 
+
[[Category: Mcsg]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:37:43 2008''
+
[[Category: PSI, Protein structure initiative]]
 +
[[Category: Unknown function]]

Current revision

Structural Genomics, the crystal structure of the CorC/HlyC transporter associated domain of a CBS domain protein from Chlorobium tepidum TLS

PDB ID 2pls

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools