2pma

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:10, 21 February 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2pma.gif|left|200px]]
 
-
{{Structure
+
==Structural Genomics, the crystal structure of a protein Lpg0085 with unknown function (DUF785) from Legionella pneumophila subsp. pneumophila str. Philadelphia 1.==
-
|PDB= 2pma |SIZE=350|CAPTION= <scene name='initialview01'>2pma</scene>, resolution 1.89&Aring;
+
<StructureSection load='2pma' size='340' side='right'caption='[[2pma]], [[Resolution|resolution]] 1.89&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>
+
<table><tr><td colspan='2'>[[2pma]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 Legionella pneumophila subsp. pneumophila str. Philadelphia 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PMA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PMA FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.89&#8491;</td></tr>
-
|GENE= lpg0085 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272624 Legionella pneumophila subsp. pneumophila str. Philadelphia 1])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4067 COG4067]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pma FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pma OCA], [https://pdbe.org/2pma PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pma RCSB], [https://www.ebi.ac.uk/pdbsum/2pma PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pma ProSAT], [https://www.topsan.org/Proteins/MCSG/2pma TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pma FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pma OCA], [http://www.ebi.ac.uk/pdbsum/2pma PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2pma RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/Q5ZZC6_LEGPH Q5ZZC6_LEGPH]
-
 
+
== Evolutionary Conservation ==
-
'''Structural Genomics, the crystal structure of a protein Lpg0085 with unknown function (DUF785) from Legionella pneumophila subsp. pneumophila str. Philadelphia 1.'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pm/2pma_consurf.spt"</scriptWhenChecked>
-
2PMA is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Legionella_pneumophila_subsp._pneumophila_str._philadelphia_1 Legionella pneumophila subsp. pneumophila str. philadelphia 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PMA OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Legionella pneumophila subsp. pneumophila str. philadelphia 1]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: Joachimiak, A.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pma ConSurf].
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
<div style="clear:both"></div>
-
[[Category: Moy, S.]]
+
__TOC__
-
[[Category: Mulligan, R.]]
+
</StructureSection>
-
[[Category: Tan, K.]]
+
[[Category: Large Structures]]
-
[[Category: apc86035 2]]
+
[[Category: Legionella pneumophila subsp. pneumophila str. Philadelphia 1]]
-
[[Category: duf785]]
+
[[Category: Joachimiak A]]
-
[[Category: legionella pneumophila subsp. pneumophila str. philadelphia 1]]
+
[[Category: Moy S]]
-
[[Category: mcsg]]
+
[[Category: Mulligan R]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Tan K]]
-
[[Category: protein lpg0085]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi-2]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:37:52 2008''
+

Current revision

Structural Genomics, the crystal structure of a protein Lpg0085 with unknown function (DUF785) from Legionella pneumophila subsp. pneumophila str. Philadelphia 1.

PDB ID 2pma

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2pma"
Personal tools