5otn

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==Crystal structure of zebrafish MTH1 in complex with O6-methyl-dGMP==
==Crystal structure of zebrafish MTH1 in complex with O6-methyl-dGMP==
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<StructureSection load='5otn' size='340' side='right' caption='[[5otn]], [[Resolution|resolution]] 0.99&Aring;' scene=''>
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<StructureSection load='5otn' size='340' side='right'caption='[[5otn]], [[Resolution|resolution]] 0.99&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5otn]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OTN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5OTN FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5otn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Danio_rerio Danio rerio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OTN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5OTN FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=6OG:6-O-METHYL+GUANOSINE-5-MONOPHOSPHATE'>6OG</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 0.99&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5otm|5otm]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=6OG:6-O-METHYL+GUANOSINE-5-MONOPHOSPHATE'>6OG</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5otn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5otn OCA], [http://pdbe.org/5otn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5otn RCSB], [http://www.ebi.ac.uk/pdbsum/5otn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5otn ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5otn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5otn OCA], [https://pdbe.org/5otn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5otn RCSB], [https://www.ebi.ac.uk/pdbsum/5otn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5otn ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/8ODP_DANRE 8ODP_DANRE] Oxidized purine nucleoside triphosphate hydrolase which is a prominent sanitizer of the oxidized nucleotide pool (PubMed:26862114, PubMed:30304478). Catalyzes the hydrolysis of 2-oxo-dATP (2-hydroxy-dATP) into 2-oxo-dAMP (PubMed:26862114). Has also a significant hydrolase activity toward 2-oxo-ATP, 8-oxo-dGTP and 8-oxo-dATP (PubMed:26862114, PubMed:30304478). Through the hydrolysis of oxidized purine nucleoside triphosphates, prevents their incorporation into DNA and the subsequent transversions A:T to C:G and G:C to T:A (PubMed:26862114, PubMed:30304478). Also catalyzes the hydrolysis of methylated purine nucleoside triphosphate preventing their integration into DNA (PubMed:32144205, PubMed:30304478). Through this antimutagenic activity protects cells from oxidative stress (PubMed:32144205, PubMed:26862114, PubMed:30304478).<ref>PMID:26862114</ref> <ref>PMID:30304478</ref> <ref>PMID:32144205</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Nucleotides in the free pool are more susceptible to nonenzymatic methylation than those protected in the DNA double helix. Methylated nucleotides like O6-methyl-dGTP can be mutagenic and toxic if incorporated into DNA. Removal of methylated nucleotides from the nucleotide pool may therefore be important to maintain genome integrity. We show that MutT homologue 1 (MTH1) efficiently catalyzes the hydrolysis of O6-methyl-dGTP with a catalytic efficiency similar to that for 8-oxo-dGTP. O6-methyl-dGTP activity is exclusive to MTH1 among human NUDIX proteins and conserved through evolution but not found in bacterial MutT. We present a high resolution crystal structure of human and zebrafish MTH1 in complex with O6-methyl-dGMP. By microinjecting fertilized zebrafish eggs with O6-methyl-dGTP and inhibiting MTH1 we demonstrate that survival is dependent on active MTH1 in vivo. O6-methyl-dG levels are higher in DNA extracted from zebrafish embryos microinjected with O6-methyl-dGTP and inhibition of O6-methylguanine-DNA methyl transferase (MGMT) increases the toxicity of O6-methyl-dGTP demonstrating that O6-methyl-dGTP is incorporated into DNA. MTH1 deficiency sensitizes human cells to the alkylating agent Temozolomide, a sensitization that is more pronounced upon MGMT inhibition. These results expand the cellular MTH1 function and suggests MTH1 also is important for removal of methylated nucleotides from the nucleotide pool.
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MutT homologue 1 (MTH1) catalyzes the hydrolysis of mutagenic O6-methyl-dGTP.,Jemth AS, Gustafsson R, Brautigam L, Henriksson L, Vallin KSA, Sarno A, Almlof I, Homan E, Rasti A, Warpman Berglund U, Stenmark P, Helleday T Nucleic Acids Res. 2018 Oct 10. pii: 5124590. doi: 10.1093/nar/gky896. PMID:30304478<ref>PMID:30304478</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 5otn" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[7%2C8-dihydro-8-oxoguanine triphosphatase 3D structures|7%2C8-dihydro-8-oxoguanine triphosphatase 3D structures]]
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Berglund, U Warpman]]
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[[Category: Danio rerio]]
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[[Category: Brautigam, L]]
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[[Category: Large Structures]]
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[[Category: Gustafsson, R]]
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[[Category: Brautigam L]]
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[[Category: Helleday, T]]
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[[Category: Carreras Puigvert J]]
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[[Category: Henriksson, L]]
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[[Category: Gustafsson R]]
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[[Category: Homan, E]]
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[[Category: Helleday T]]
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[[Category: Jemth, A S]]
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[[Category: Henriksson L]]
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[[Category: Puigvert, J Carreras]]
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[[Category: Homan E]]
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[[Category: Stenmark, P]]
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[[Category: Jemth A-S]]
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[[Category: Complex]]
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[[Category: Stenmark P]]
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[[Category: Hydrolase]]
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[[Category: Warpman Berglund U]]
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[[Category: Inhibitor]]
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[[Category: Methylated nucleotide]]
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[[Category: Mth1]]
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[[Category: Nudix]]
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[[Category: O6-methyl-dgmp]]
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[[Category: Zebrafish]]
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Current revision

Crystal structure of zebrafish MTH1 in complex with O6-methyl-dGMP

PDB ID 5otn

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