We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

2qsx

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:35, 30 October 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of putative transcriptional regulator LysR From Vibrio parahaemolyticus==
==Crystal structure of putative transcriptional regulator LysR From Vibrio parahaemolyticus==
-
<StructureSection load='2qsx' size='340' side='right' caption='[[2qsx]], [[Resolution|resolution]] 1.64&Aring;' scene=''>
+
<StructureSection load='2qsx' size='340' side='right'caption='[[2qsx]], [[Resolution|resolution]] 1.64&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2qsx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibpa Vibpa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QSX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2QSX FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2qsx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_RIMD_2210633 Vibrio parahaemolyticus RIMD 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QSX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QSX FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.64&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VP0635 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=223926 VIBPA])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qsx OCA], [https://pdbe.org/2qsx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qsx RCSB], [https://www.ebi.ac.uk/pdbsum/2qsx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qsx ProSAT], [https://www.topsan.org/Proteins/MCSG/2qsx TOPSAN]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2qsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qsx OCA], [http://pdbe.org/2qsx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2qsx RCSB], [http://www.ebi.ac.uk/pdbsum/2qsx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2qsx ProSAT], [http://www.topsan.org/Proteins/MCSG/2qsx TOPSAN]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q87RY9_VIBPA Q87RY9_VIBPA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 14: Line 15:
<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qs/2qsx_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qs/2qsx_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 21: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Vibpa]]
+
[[Category: Large Structures]]
-
[[Category: Abdullah, J]]
+
[[Category: Vibrio parahaemolyticus RIMD 2210633]]
-
[[Category: Binkowski, T A]]
+
[[Category: Abdullah J]]
-
[[Category: Joachimiak, A]]
+
[[Category: Binkowski TA]]
-
[[Category: Structural genomic]]
+
[[Category: Joachimiak A]]
-
[[Category: Wu, R]]
+
[[Category: Wu R]]
-
[[Category: Dna-binding]]
+
-
[[Category: Lysr family]]
+
-
[[Category: Mcsg]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: The putative transcriptional regulator]]
+
-
[[Category: Transcription]]
+
-
[[Category: Transcription regulation]]
+

Current revision

Crystal structure of putative transcriptional regulator LysR From Vibrio parahaemolyticus

PDB ID 2qsx

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools