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| | ==Proteases from Pseudoalteromonas arctica PAMC 21717 (Pro21717)== | | ==Proteases from Pseudoalteromonas arctica PAMC 21717 (Pro21717)== |
| - | <StructureSection load='5yl7' size='340' side='right' caption='[[5yl7]], [[Resolution|resolution]] 1.40Å' scene=''> | + | <StructureSection load='5yl7' size='340' side='right'caption='[[5yl7]], [[Resolution|resolution]] 1.40Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[5yl7]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Dsm_18437 Dsm 18437] and [http://en.wikipedia.org/wiki/Pseudoalteromonas_arctica Pseudoalteromonas arctica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YL7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YL7 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5yl7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudoalteromonas_arctica Pseudoalteromonas arctica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YL7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5YL7 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4Å</td></tr> |
| - | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yl7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yl7 OCA], [http://pdbe.org/5yl7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yl7 RCSB], [http://www.ebi.ac.uk/pdbsum/5yl7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yl7 ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5yl7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yl7 OCA], [https://pdbe.org/5yl7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5yl7 RCSB], [https://www.ebi.ac.uk/pdbsum/5yl7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5yl7 ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/A0A290S6P3_9GAMM A0A290S6P3_9GAMM] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Dsm 18437]] | + | [[Category: Large Structures]] |
| | [[Category: Pseudoalteromonas arctica]] | | [[Category: Pseudoalteromonas arctica]] |
| - | [[Category: Lee, C W]] | + | [[Category: Lee CW]] |
| - | [[Category: Lee, J H]] | + | [[Category: Lee JH]] |
| - | [[Category: Hydrolase]]
| + | |
| - | [[Category: Psychrophilic bacterium]]
| + | |
| - | [[Category: Serine protease]]
| + | |
| Structural highlights
Function
A0A290S6P3_9GAMM
Publication Abstract from PubMed
Enzymes isolated from organisms found in cold habitats generally exhibit higher catalytic activity at low temperatures than their mesophilic homologs and are therefore known as cold-active enzymes. Cold-active proteases are very useful in a variety of biotechnological applications, particularly as active ingredients in laundry and dishwashing detergents, where they provide strong protein-degrading activity in cold water. We identified a cold-active protease (Pro21717) from a psychrophilic bacterium, Pseudoalteromonas arctica PAMC 21717, and determined the crystal structure of its catalytic domain (CD) at a resolution of 1.4 A. The Pro21717-CD structure shows a conserved subtilisin-like fold with a typical catalytic triad (Asp185, His244, and Ser425) and contains four calcium ions and three disulfide bonds. Interestingly, we observed an unexpected electron density at the substrate-binding site from a co-purified peptide. Although the sequence of this peptide is unknown, analysis of the peptide-complexed structure nonetheless provides some indication of the substrate recognition and binding mode of Pro21717. Moreover, various parameters, including a wide substrate pocket size, an abundant active-site loop content, and a flexible structure provide potential explanations for the cold-adapted properties of Pro21717. In conclusion, this is first structural characterization of a cold-adapted subtilisin-like protease, and these findings provide a structural and functional basis for industrial applications of Pro21717 as a cold-active laundry or dishwashing detergent enzyme.
Crystal structure of a cold-active protease (Pro21717) from the psychrophilic bacterium, Pseudoalteromonas arctica PAMC 21717, at 1.4 A resolution: Structural adaptations to cold and functional analysis of a laundry detergent enzyme.,Park HJ, Lee CW, Kim D, Do H, Han SJ, Kim JE, Koo BH, Lee JH, Yim JH PLoS One. 2018 Feb 21;13(2):e0191740. doi: 10.1371/journal.pone.0191740., eCollection 2018. PMID:29466378[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Park HJ, Lee CW, Kim D, Do H, Han SJ, Kim JE, Koo BH, Lee JH, Yim JH. Crystal structure of a cold-active protease (Pro21717) from the psychrophilic bacterium, Pseudoalteromonas arctica PAMC 21717, at 1.4 A resolution: Structural adaptations to cold and functional analysis of a laundry detergent enzyme. PLoS One. 2018 Feb 21;13(2):e0191740. doi: 10.1371/journal.pone.0191740., eCollection 2018. PMID:29466378 doi:http://dx.doi.org/10.1371/journal.pone.0191740
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