This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2v3u

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:04, 13 December 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Structure of the ligand-binding core of the ionotropic glutamate receptor-like GluRdelta2 in complex with D-serine==
==Structure of the ligand-binding core of the ionotropic glutamate receptor-like GluRdelta2 in complex with D-serine==
-
<StructureSection load='2v3u' size='340' side='right' caption='[[2v3u]], [[Resolution|resolution]] 1.74&Aring;' scene=''>
+
<StructureSection load='2v3u' size='340' side='right'caption='[[2v3u]], [[Resolution|resolution]] 1.74&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2v3u]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Buffalo_rat Buffalo rat]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V3U FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2v3u]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V3U FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DSN:D-SERINE'>DSN</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.74&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2v3t|2v3t]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DSN:D-SERINE'>DSN</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v3u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v3u OCA], [http://pdbe.org/2v3u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2v3u RCSB], [http://www.ebi.ac.uk/pdbsum/2v3u PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2v3u ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v3u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v3u OCA], [https://pdbe.org/2v3u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v3u RCSB], [https://www.ebi.ac.uk/pdbsum/2v3u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v3u ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/GRID2_RAT GRID2_RAT] Receptor for glutamate. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. The postsynaptic actions of Glu are mediated by a variety of receptors that are named according to their selective agonists.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 31: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Buffalo rat]]
+
[[Category: Large Structures]]
-
[[Category: Gajhede, M]]
+
[[Category: Rattus norvegicus]]
-
[[Category: Kastrup, J S]]
+
[[Category: Gajhede M]]
-
[[Category: Naur, P]]
+
[[Category: Kastrup JS]]
-
[[Category: Vestergaard, B]]
+
[[Category: Naur P]]
-
[[Category: D-serine]]
+
[[Category: Vestergaard B]]
-
[[Category: Glycoprotein]]
+
-
[[Category: Ion transport]]
+
-
[[Category: Ionic channel]]
+
-
[[Category: Ionotropic glutamate receptor]]
+
-
[[Category: Ligand-binding core]]
+
-
[[Category: Membrane]]
+
-
[[Category: Membrane protein]]
+
-
[[Category: Postsynaptic membrane]]
+
-
[[Category: Receptor]]
+
-
[[Category: Transmembrane]]
+
-
[[Category: Transport]]
+

Current revision

Structure of the ligand-binding core of the ionotropic glutamate receptor-like GluRdelta2 in complex with D-serine

PDB ID 2v3u

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools