This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2qez

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:49, 25 January 2023) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2qez.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of ethanolamine ammonia-lyase heavy chain (YP_013784.1) from Listeria monocytogenes 4b F2365 at 2.15 A resolution==
-
|PDB= 2qez |SIZE=350|CAPTION= <scene name='initialview01'>2qez</scene>, resolution 2.150&Aring;
+
<StructureSection load='2qez' size='340' side='right'caption='[[2qez]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>[[2qez]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Listeria_monocytogenes_serotype_4b_str._F2365 Listeria monocytogenes serotype 4b str. F2365]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QEZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QEZ FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Ethanolamine_ammonia-lyase Ethanolamine ammonia-lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.3.1.7 4.3.1.7] </span>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|GENE= YP_013784.1, eutB, LMOf2365_1185 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=265669 Listeria monocytogenes str. 4b F2365])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qez FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qez OCA], [https://pdbe.org/2qez PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qez RCSB], [https://www.ebi.ac.uk/pdbsum/2qez PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qez ProSAT], [https://www.topsan.org/Proteins/JCSG/2qez TOPSAN]</span></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4303 EutB]</span>
+
</table>
-
|RELATEDENTRY=
+
== Evolutionary Conservation ==
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2qez FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qez OCA], [http://www.ebi.ac.uk/pdbsum/2qez PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2qez RCSB]</span>
+
[[Image:Consurf_key_small.gif|200px|right]]
-
}}
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
'''Crystal structure of ethanolamine ammonia-lyase heavy chain (YP_013784.1) from Listeria monocytogenes 4b F2365 at 2.15 A resolution'''
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qe/2qez_consurf.spt"</scriptWhenChecked>
-
 
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
2QEZ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Listeria_monocytogenes_str._4b_f2365 Listeria monocytogenes str. 4b f2365]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QEZ OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qez ConSurf].
-
[[Category: Ethanolamine ammonia-lyase]]
+
<div style="clear:both"></div>
-
[[Category: Listeria monocytogenes str. 4b f2365]]
+
__TOC__
-
[[Category: Single protein]]
+
</StructureSection>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
[[Category: Large Structures]]
-
[[Category: ethanolamine ammonia lyase large subunit (eutb)]]
+
[[Category: Listeria monocytogenes serotype 4b str. F2365]]
-
[[Category: ethanolamine ammonia-lyase heavy chain]]
+
-
[[Category: jcsg]]
+
-
[[Category: joint center for structural genomic]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi-2]]
+
-
[[Category: structural genomic]]
+
-
[[Category: yp_013784 1]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:48:32 2008''
+

Current revision

Crystal structure of ethanolamine ammonia-lyase heavy chain (YP_013784.1) from Listeria monocytogenes 4b F2365 at 2.15 A resolution

PDB ID 2qez

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools