This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2qhv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:54, 13 March 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2qhv.jpg|left|200px]]
 
-
{{Structure
+
==Structural Basis of Octanoic Acid Recognition by Lipoate-Protein Ligase B==
-
|PDB= 2qhv |SIZE=350|CAPTION= <scene name='initialview01'>2qhv</scene>, resolution 1.600&Aring;
+
<StructureSection load='2qhv' size='340' side='right'caption='[[2qhv]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
|SITE= <scene name='pdbsite=AC1:Oc9+Binding+Site+For+Residue+A+1001'>AC1</scene>
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=OC9:OCTAN-1-OL'>OC9</scene>
+
<table><tr><td colspan='2'>[[2qhv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QHV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QHV FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
|GENE= TTC 1746 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=274 Thermus thermophilus])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=OC9:OCTAN-1-OL'>OC9</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qhv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qhv OCA], [https://pdbe.org/2qhv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qhv RCSB], [https://www.ebi.ac.uk/pdbsum/2qhv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qhv ProSAT]</span></td></tr>
-
|RELATEDENTRY=[[2qhs|2QHS]], [[2qht|2QHT]], [[2qhu|2QHU]]
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2qhv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qhv OCA], [http://www.ebi.ac.uk/pdbsum/2qhv PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2qhv RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/LIPB_THET8 LIPB_THET8] Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate (By similarity).
-
 
+
== Evolutionary Conservation ==
-
'''Structural Basis of Octanoic Acid Recognition by Lipoate-Protein Ligase B'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qh/2qhv_consurf.spt"</scriptWhenChecked>
-
2QHV is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QHV OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==Reference==
+
</jmolCheckbox>
-
Structural basis of octanoic acid recognition by lipoate-protein ligase B., Kim do J, Lee SJ, Kim HS, Kim KH, Lee HH, Yoon HJ, Suh SW, Proteins. 2008 Mar;70(4):1620-5. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18076036 18076036]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qhv ConSurf].
-
[[Category: Single protein]]
+
<div style="clear:both"></div>
-
[[Category: Thermus thermophilus]]
+
__TOC__
-
[[Category: Kim, D J.]]
+
</StructureSection>
-
[[Category: Kim, H S.]]
+
[[Category: Large Structures]]
-
[[Category: Kim, K H.]]
+
[[Category: Thermus thermophilus HB8]]
-
[[Category: Lee, H H.]]
+
[[Category: Kim DJ]]
-
[[Category: Lee, S J.]]
+
[[Category: Kim HS]]
-
[[Category: Suh, S W.]]
+
[[Category: Kim KH]]
-
[[Category: Yoon, H J.]]
+
[[Category: Lee HH]]
-
[[Category: globular protein]]
+
[[Category: Lee SJ]]
-
[[Category: transferase]]
+
[[Category: Suh SW]]
-
 
+
[[Category: Yoon HJ]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:49:29 2008''
+

Current revision

Structural Basis of Octanoic Acid Recognition by Lipoate-Protein Ligase B

PDB ID 2qhv

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2qhv"
Personal tools