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- | [[Image:2qlt.jpg|left|200px]] | |
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- | {{Structure
| + | ==Crystal structure of an isoform of DL-glycerol-3-phosphatase, Rhr2p, from Saccharomyces cerevisiae== |
- | |PDB= 2qlt |SIZE=350|CAPTION= <scene name='initialview01'>2qlt</scene>, resolution 1.60Å
| + | <StructureSection load='2qlt' size='340' side='right'caption='[[2qlt]], [[Resolution|resolution]] 1.60Å' scene=''> |
- | |SITE=
| + | == Structural highlights == |
- | |LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> | + | <table><tr><td colspan='2'>[[2qlt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QLT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QLT FirstGlance]. <br> |
- | |ACTIVITY=
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6Å</td></tr> |
- | |GENE= GPP1, RHR2, YIL053W ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae])
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
- | |DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG0637 COG0637]</span>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qlt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qlt OCA], [https://pdbe.org/2qlt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qlt RCSB], [https://www.ebi.ac.uk/pdbsum/2qlt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qlt ProSAT], [https://www.topsan.org/Proteins/MCSG/2qlt TOPSAN]</span></td></tr> |
- | |RELATEDENTRY=
| + | </table> |
- | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2qlt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qlt OCA], [http://www.ebi.ac.uk/pdbsum/2qlt PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2qlt RCSB]</span>
| + | == Function == |
- | }}
| + | [https://www.uniprot.org/uniprot/GPP1_YEAST GPP1_YEAST] Major isoform of glycerol-1-phosphate phosphohydrolase involved in glycerol biosynthesis. Plays a role in osmoadaptation and required for adaptation to anaerobic conditions.<ref>PMID:8662716</ref> <ref>PMID:11058591</ref> <ref>PMID:15113568</ref> <ref>PMID:16358322</ref> <ref>PMID:18438874</ref> |
- | | + | == Evolutionary Conservation == |
- | '''Crystal structure of an isoform of DL-glycerol-3-phosphatase, Rhr2p, from Saccharomyces cerevisiae'''
| + | [[Image:Consurf_key_small.gif|200px|right]] |
- | | + | Check<jmol> |
- | | + | <jmolCheckbox> |
- | ==About this Structure== | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ql/2qlt_consurf.spt"</scriptWhenChecked> |
- | 2QLT is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QLT OCA].
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| + | <text>to colour the structure by Evolutionary Conservation</text> |
| + | </jmolCheckbox> |
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qlt ConSurf]. |
| + | <div style="clear:both"></div> |
| + | == References == |
| + | <references/> |
| + | __TOC__ |
| + | </StructureSection> |
| + | [[Category: Large Structures]] |
| [[Category: Saccharomyces cerevisiae]] | | [[Category: Saccharomyces cerevisiae]] |
- | [[Category: Single protein]]
| + | [[Category: Edwards A]] |
- | [[Category: Edwards, A.]] | + | [[Category: Evdokimova E]] |
- | [[Category: Evdokimova, E.]] | + | [[Category: Joachimiak A]] |
- | [[Category: Joachimiak, A.]] | + | [[Category: Kudritska M]] |
- | [[Category: Kudritska, M.]] | + | [[Category: Savchenko A]] |
- | [[Category: MCSG, Midwest Center for Structural Genomics.]]
| + | [[Category: Tan K]] |
- | [[Category: Savchenko, A.]] | + | |
- | [[Category: Tan, K.]] | + | |
- | [[Category: apc7326]]
| + | |
- | [[Category: dl-glycerol-3-phosphatase isoform]]
| + | |
- | [[Category: hydrolase]]
| + | |
- | [[Category: mcsg]]
| + | |
- | [[Category: midwest center for structural genomic]]
| + | |
- | [[Category: protein structure initiative]]
| + | |
- | [[Category: psi-2]]
| + | |
- | [[Category: rhr2p]]
| + | |
- | [[Category: saccharomyces cerevisiae]]
| + | |
- | [[Category: structural genomic]]
| + | |
- | | + | |
- | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:50:39 2008''
| + | |
| Structural highlights
2qlt is a 1 chain structure with sequence from Saccharomyces cerevisiae. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
| Method: | X-ray diffraction, Resolution 1.6Å |
Ligands: | , , , , |
Resources: | FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN |
Function
GPP1_YEAST Major isoform of glycerol-1-phosphate phosphohydrolase involved in glycerol biosynthesis. Plays a role in osmoadaptation and required for adaptation to anaerobic conditions.[1] [2] [3] [4] [5]
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
References
- ↑ Norbeck J, Pahlman AK, Akhtar N, Blomberg A, Adler L. Purification and characterization of two isoenzymes of DL-glycerol-3-phosphatase from Saccharomyces cerevisiae. Identification of the corresponding GPP1 and GPP2 genes and evidence for osmotic regulation of Gpp2p expression by the osmosensing mitogen-activated protein kinase signal transduction pathway. J Biol Chem. 1996 Jun 7;271(23):13875-81. PMID:8662716
- ↑ Pahlman AK, Granath K, Ansell R, Hohmann S, Adler L. The yeast glycerol 3-phosphatases Gpp1p and Gpp2p are required for glycerol biosynthesis and differentially involved in the cellular responses to osmotic, anaerobic, and oxidative stress. J Biol Chem. 2001 Feb 2;276(5):3555-63. Epub 2000 Oct 31. PMID:11058591 doi:http://dx.doi.org/10.1074/jbc.M007164200
- ↑ Nguyen HT, Dieterich A, Athenstaedt K, Truong NH, Stahl U, Nevoigt E. Engineering of Saccharomyces cerevisiae for the production of L-glycerol 3-phosphate. Metab Eng. 2004 Apr;6(2):155-63. PMID:15113568 doi:http://dx.doi.org/10.1016/j.ymben.2004.02.005
- ↑ Granath K, Modig T, Forsmark A, Adler L, Liden G. The YIG1 (YPL201c) encoded protein is involved in regulating anaerobic glycerol metabolism in Saccharomyces cerevisiae. Yeast. 2005 Dec;22(16):1257-68. PMID:16358322 doi:http://dx.doi.org/10.1002/yea.1307
- ↑ Popp A, Nguyen HT, Boulahya K, Bideaux C, Alfenore S, Guillouet SE, Nevoigt E. Fermentative production of L-glycerol 3-phosphate utilizing a Saccharomyces cerevisiae strain with an engineered glycerol biosynthetic pathway. Biotechnol Bioeng. 2008 Jun 15;100(3):497-505. doi: 10.1002/bit.21777. PMID:18438874 doi:http://dx.doi.org/10.1002/bit.21777
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