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| ==New Cyt-like delta-endotoxins from Dickeya dadantii - CytC protein== | | ==New Cyt-like delta-endotoxins from Dickeya dadantii - CytC protein== |
- | <StructureSection load='2mlw' size='340' side='right' caption='[[2mlw]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | + | <StructureSection load='2mlw' size='340' side='right'caption='[[2mlw]]' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[2mlw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Cfbp_1269 Cfbp 1269]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MLW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2MLW FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2mlw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Dickeya_dadantii Dickeya dadantii]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MLW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2MLW FirstGlance]. <br> |
- | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Dda3937_01343 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=204038 CFBP 1269])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2mlw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mlw OCA], [http://pdbe.org/2mlw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2mlw RCSB], [http://www.ebi.ac.uk/pdbsum/2mlw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2mlw ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2mlw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mlw OCA], [https://pdbe.org/2mlw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2mlw RCSB], [https://www.ebi.ac.uk/pdbsum/2mlw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2mlw ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/E0SJ33_DICD3 E0SJ33_DICD3] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Cfbp 1269]] | + | [[Category: Dickeya dadantii]] |
- | [[Category: Condemine, G]] | + | [[Category: Large Structures]] |
- | [[Category: Costechareyre, D]] | + | [[Category: Condemine G]] |
- | [[Category: Effantin, G]]
| + | [[Category: Costechareyre D]] |
- | [[Category: Landon, C]] | + | [[Category: Da Silva P]] |
- | [[Category: Loth, K]] | + | [[Category: Effantin G]] |
- | [[Category: Rahbe, Y]] | + | [[Category: Landon C]] |
- | [[Category: Silva, P Da]] | + | [[Category: Loth K]] |
- | [[Category: Cytolysin fold]] | + | [[Category: Rahbe Y]] |
- | [[Category: Modified greek key topology]] | + | |
- | [[Category: Toxin]]
| + | |
| Structural highlights
Function
E0SJ33_DICD3
Publication Abstract from PubMed
In the track of new biopesticides, four genes namely cytA, cytB, cytC and cytD encoding proteins homologous to Bacillus thuringiensis (Bt) Cyt toxins have been identified in the plant pathogenic bacteria Dickeya dadantii genome. Here we show that three Cyt-like delta-endotoxins from D. dadantii (CytA, CytB and CytC) are toxic to the pathogen of the pea aphid Acyrthosiphon pisum in terms of both mortality and growth rate. The phylogenetic analysis of the comprehensive set of Cyt toxins available in genomic databases shows that the whole family is of limited taxonomic occurrence, though in quite diverse microbial taxa. From a structure-function perspective the 3D structure of CytC and its backbone dynamics in solution have been determined by NMR. CytC adopts a cytolysin fold, structurally classified as a Cyt2-like protein. Moreover, the identification of a putative lipid binding pocket in CytC structure, which has been probably maintained in most members of the Cyt-toxin family, could support the importance of this lipid binding cavity for the mechanism of action of the whole family. This integrative approach provided significant insights into the evolutionary and functional history of D. dadantii Cyt toxins, which appears to be interesting leads for biopesticides.
New Cyt-like delta-endotoxins from Dickeya dadantii: structure and aphicidal activity.,Loth K, Costechareyre D, Effantin G, Rahbe Y, Condemine G, Landon C, da Silva P Sci Rep. 2015 Mar 5;5:8791. doi: 10.1038/srep08791. PMID:25740111[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Loth K, Costechareyre D, Effantin G, Rahbe Y, Condemine G, Landon C, da Silva P. New Cyt-like delta-endotoxins from Dickeya dadantii: structure and aphicidal activity. Sci Rep. 2015 Mar 5;5:8791. doi: 10.1038/srep08791. PMID:25740111 doi:http://dx.doi.org/10.1038/srep08791
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