2qrr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:31, 25 June 2021) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2qrr.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of the soluble domain of the ABC transporter, ATP-binding protein from Vibrio parahaemolyticus==
-
|PDB= 2qrr |SIZE=350|CAPTION= <scene name='initialview01'>2qrr</scene>, resolution 1.71&Aring;
+
<StructureSection load='2qrr' size='340' side='right'caption='[[2qrr]], [[Resolution|resolution]] 1.71&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>[[2qrr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibpa Vibpa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QRR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QRR FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-
|GENE= metN, VP0706 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=223926 Vibrio parahaemolyticus RIMD 2210633])
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam09383 NIL]</span>
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">metN, VP0706 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=223926 VIBPA])</td></tr>
-
|RELATEDENTRY=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qrr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qrr OCA], [https://pdbe.org/2qrr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qrr RCSB], [https://www.ebi.ac.uk/pdbsum/2qrr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qrr ProSAT], [https://www.topsan.org/Proteins/MCSG/2qrr TOPSAN]</span></td></tr>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2qrr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qrr OCA], [http://www.ebi.ac.uk/pdbsum/2qrr PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2qrr RCSB]</span>
+
</table>
-
}}
+
== Function ==
 +
[[https://www.uniprot.org/uniprot/METN_VIBPA METN_VIBPA]] Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qr/2qrr_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qrr ConSurf].
 +
<div style="clear:both"></div>
-
'''Crystal structure of the soluble domain of the ABC transporter, ATP-binding protein from Vibrio parahaemolyticus'''
+
==See Also==
-
 
+
*[[ABC transporter 3D structures|ABC transporter 3D structures]]
-
 
+
*[[Endonuclease 3D structures|Endonuclease 3D structures]]
-
==About this Structure==
+
__TOC__
-
2QRR is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_rimd_2210633 Vibrio parahaemolyticus rimd 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QRR OCA].
+
</StructureSection>
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Vibrio parahaemolyticus rimd 2210633]]
+
[[Category: Vibpa]]
-
[[Category: Freeman, L.]]
+
[[Category: Freeman, L]]
-
[[Category: Joachimiak, A.]]
+
[[Category: Joachimiak, A]]
-
[[Category: Kim, Y.]]
+
[[Category: Kim, Y]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Structural genomic]]
-
[[Category: Zhou, M.]]
+
[[Category: Zhou, M]]
-
[[Category: alpha-beta structure]]
+
[[Category: Alpha-beta structure]]
-
[[Category: amino-acid transport]]
+
[[Category: Amino-acid transport]]
-
[[Category: atp-binding]]
+
[[Category: Atp-binding]]
-
[[Category: hydrolase]]
+
[[Category: Hydrolase]]
-
[[Category: inner membrane]]
+
[[Category: Inner membrane]]
-
[[Category: mcsg]]
+
[[Category: Mcsg]]
-
[[Category: membrane]]
+
[[Category: Membrane]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Nucleotide-binding]]
-
[[Category: nucleotide-binding]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: protein structure initiative]]
+
[[Category: Transport]]
-
[[Category: psi-2]]
+
-
[[Category: structural genomic]]
+
-
[[Category: transport]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:52:33 2008''
+

Current revision

Crystal structure of the soluble domain of the ABC transporter, ATP-binding protein from Vibrio parahaemolyticus

PDB ID 2qrr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2qrr"
Personal tools