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| | ==Solution Structure of Penicillium Antifungal Protein PAF== | | ==Solution Structure of Penicillium Antifungal Protein PAF== |
| - | <StructureSection load='2mhv' size='340' side='right' caption='[[2mhv]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | + | <StructureSection load='2mhv' size='340' side='right'caption='[[2mhv]]' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[2mhv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_10106 Atcc 10106]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MHV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2MHV FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2mhv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Penicillium_chrysogenum Penicillium chrysogenum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MHV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2MHV FirstGlance]. <br> |
| - | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">paf ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5076 ATCC 10106])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 20 models</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2mhv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mhv OCA], [http://pdbe.org/2mhv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2mhv RCSB], [http://www.ebi.ac.uk/pdbsum/2mhv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2mhv ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2mhv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mhv OCA], [https://pdbe.org/2mhv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2mhv RCSB], [https://www.ebi.ac.uk/pdbsum/2mhv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2mhv ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Q01701_PENCH Q01701_PENCH] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Atcc 10106]] | + | [[Category: Large Structures]] |
| - | [[Category: Batta, G]] | + | [[Category: Penicillium chrysogenum]] |
| - | [[Category: Fizil, A]] | + | [[Category: Batta G]] |
| - | [[Category: Antifungal]] | + | [[Category: Fizil A]] |
| - | [[Category: Antifungal protein]]
| + | |
| - | [[Category: Basic]]
| + | |
| - | [[Category: Chrysogenum]]
| + | |
| - | [[Category: Disulfide]]
| + | |
| - | [[Category: Penicillium]]
| + | |
| - | [[Category: Stable]]
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| Structural highlights
Function
Q01701_PENCH
Publication Abstract from PubMed
Transition between conformational states in proteins is being recognized as a possible key factor of function. In support of this, hidden dynamic NMR structures were detected in several cases up to populations of a few percent. Here, we show by two- and three-state analysis of thermal unfolding, that the population of hidden states may weight 20-40 % at 298 K in a disulfide-rich protein. In addition, sensitive 15 N-CEST NMR experiments identified a low populated (0.15 %) state that was in slow exchange with the folded PAF protein. Remarkably, other techniques failed to identify the rest of the NMR "dark matter". Comparison of the temperature dependence of chemical shifts from experiments and molecular dynamics calculations suggests that hidden conformers of PAF differ in the loop and terminal regions and are most similar in the evolutionary conserved core. Our observations point to the existence of a complex conformational landscape with multiple conformational states in dynamic equilibrium, with diverse exchange rates presumably responsible for the completely hidden nature of a considerable fraction.
"Invisible" Conformers of an Antifungal Disulfide Protein Revealed by Constrained Cold and Heat Unfolding, CEST-NMR Experiments, and Molecular Dynamics Calculations.,Fizil A, Gaspari Z, Barna T, Marx F, Batta G Chemistry. 2015 Feb 12. doi: 10.1002/chem.201404879. PMID:25676351[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Fizil A, Gaspari Z, Barna T, Marx F, Batta G. "Invisible" Conformers of an Antifungal Disulfide Protein Revealed by Constrained Cold and Heat Unfolding, CEST-NMR Experiments, and Molecular Dynamics Calculations. Chemistry. 2015 Feb 12. doi: 10.1002/chem.201404879. PMID:25676351 doi:http://dx.doi.org/10.1002/chem.201404879
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