This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2qud

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:40, 30 August 2023) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2qud.jpg|left|200px]]
 
-
{{Structure
+
==PP7 Coat Protein Dimer==
-
|PDB= 2qud |SIZE=350|CAPTION= <scene name='initialview01'>2qud</scene>, resolution 1.60&Aring;
+
<StructureSection load='2qud' size='340' side='right'caption='[[2qud]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
+
<table><tr><td colspan='2'>[[2qud]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_phage_PP7 Pseudomonas phage PP7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QUD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QUD FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
|GENE= PP7 Coat Protein ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=12023 Pseudomonas phage PP7])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qud FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qud OCA], [https://pdbe.org/2qud PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qud RCSB], [https://www.ebi.ac.uk/pdbsum/2qud PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qud ProSAT]</span></td></tr>
-
|RELATEDENTRY=[[1dwn|1DWN]], [[2qux|2QUX]]
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2qud FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qud OCA], [http://www.ebi.ac.uk/pdbsum/2qud PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2qud RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/Q38062_BPPP7 Q38062_BPPP7]
-
 
+
<div style="background-color:#fffaf0;">
-
'''PP7 Coat Protein Dimer'''
+
== Publication Abstract from PubMed ==
-
 
+
-
 
+
-
==Overview==
+
The cocrystal structure of the PP7 bacteriophage coat protein in complex with its translational operator identifies a distinct mode of sequence-specific RNA recognition when compared to the well-characterized MS2 coat protein-RNA complex. The structure reveals the molecular basis of the PP7 coat protein's ability to selectively bind its cognate RNA, and it demonstrates that the conserved beta-sheet surface is a flexible architecture that can evolve to recognize diverse RNA hairpins.
The cocrystal structure of the PP7 bacteriophage coat protein in complex with its translational operator identifies a distinct mode of sequence-specific RNA recognition when compared to the well-characterized MS2 coat protein-RNA complex. The structure reveals the molecular basis of the PP7 coat protein's ability to selectively bind its cognate RNA, and it demonstrates that the conserved beta-sheet surface is a flexible architecture that can evolve to recognize diverse RNA hairpins.
-
==About this Structure==
+
Structural basis for the coevolution of a viral RNA-protein complex.,Chao JA, Patskovsky Y, Almo SC, Singer RH Nat Struct Mol Biol. 2008 Jan;15(1):103-5. Epub 2007 Dec 9. PMID:18066080<ref>PMID:18066080</ref>
-
2QUD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_phage_pp7 Pseudomonas phage pp7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QUD OCA].
+
-
 
+
-
==Reference==
+
-
Structural basis for the coevolution of a viral RNA-protein complex., Chao JA, Patskovsky Y, Almo SC, Singer RH, Nat Struct Mol Biol. 2008 Jan;15(1):103-5. Epub 2007 Dec 9. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18066080 18066080]
+
-
[[Category: Pseudomonas phage pp7]]
+
-
[[Category: Single protein]]
+
-
[[Category: Chao, J A.]]
+
-
[[Category: bacteriophage]]
+
-
[[Category: capsid protein]]
+
-
[[Category: rna binding protein]]
+
-
[[Category: rna-protein complex]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:53:25 2008''
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 2qud" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Pseudomonas phage PP7]]
 +
[[Category: Chao JA]]

Current revision

PP7 Coat Protein Dimer

PDB ID 2qud

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2qud"
Personal tools