We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

2qwv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:28, 17 October 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2qwv.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of unknown function protein VCA1059==
-
|PDB= 2qwv |SIZE=350|CAPTION= <scene name='initialview01'>2qwv</scene>, resolution 2.60&Aring;
+
<StructureSection load='2qwv' size='340' side='right'caption='[[2qwv]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>[[2qwv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 Vibrio cholerae O1 biovar El Tor str. N16961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QWV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QWV FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-
|GENE= VC_A1059 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243277 Vibrio cholerae O1 biovar eltor str. N16961])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK02135 PRK02135]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qwv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qwv OCA], [https://pdbe.org/2qwv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qwv RCSB], [https://www.ebi.ac.uk/pdbsum/2qwv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qwv ProSAT], [https://www.topsan.org/Proteins/MCSG/2qwv TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2qwv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qwv OCA], [http://www.ebi.ac.uk/pdbsum/2qwv PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2qwv RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/TRMYL_VIBCH TRMYL_VIBCH]
-
 
+
== Evolutionary Conservation ==
-
'''Crystal structure of unknown function protein VCA1059'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qw/2qwv_consurf.spt"</scriptWhenChecked>
-
2QWV is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae_o1_biovar_eltor_str._n16961 Vibrio cholerae o1 biovar eltor str. n16961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QWV OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Single protein]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Vibrio cholerae o1 biovar eltor str. n16961]]
+
</jmolCheckbox>
-
[[Category: Chang, C.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qwv ConSurf].
-
[[Category: Freeman, L.]]
+
<div style="clear:both"></div>
-
[[Category: Joachimiak, A.]]
+
__TOC__
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</StructureSection>
-
[[Category: Moy, S.]]
+
[[Category: Large Structures]]
-
[[Category: Sather, A.]]
+
[[Category: Vibrio cholerae O1 biovar El Tor str. N16961]]
-
[[Category: mcsg]]
+
[[Category: Chang C]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Freeman L]]
-
[[Category: protein structure initiative]]
+
[[Category: Joachimiak A]]
-
[[Category: psi-2]]
+
[[Category: Moy S]]
-
[[Category: structural genomic]]
+
[[Category: Sather A]]
-
[[Category: unknown function]]
+
-
[[Category: vibrio cholerae]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:54:18 2008''
+

Current revision

Crystal structure of unknown function protein VCA1059

PDB ID 2qwv

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools