This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.




5qe4

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:52, 7 February 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==PanDDA analysis group deposition -- Crystal structure of PTP1B in complex with compound_FMOPL000514a==
==PanDDA analysis group deposition -- Crystal structure of PTP1B in complex with compound_FMOPL000514a==
-
<StructureSection load='5qe4' size='340' side='right' caption='[[5qe4]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
+
<StructureSection load='5qe4' size='340' side='right'caption='[[5qe4]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5qe4]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5QE4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5QE4 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5qe4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5QE4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5QE4 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=JH4:N-methylpyrimidin-2-amine'>JH4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.852&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protein-tyrosine-phosphatase Protein-tyrosine-phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.48 3.1.3.48] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=JH4:N-methylpyrimidin-2-amine'>JH4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5qe4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5qe4 OCA], [http://pdbe.org/5qe4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5qe4 RCSB], [http://www.ebi.ac.uk/pdbsum/5qe4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5qe4 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5qe4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5qe4 OCA], [https://pdbe.org/5qe4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5qe4 RCSB], [https://www.ebi.ac.uk/pdbsum/5qe4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5qe4 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/PTN1_HUMAN PTN1_HUMAN]] Tyrosine-protein phosphatase which acts as a regulator of endoplasmic reticulum unfolded protein response. Mediates dephosphorylation of EIF2AK3/PERK; inactivating the protein kinase activity of EIF2AK3/PERK. May play an important role in CKII- and p60c-src-induced signal transduction cascades. May regulate the EFNA5-EPHA3 signaling pathway which modulates cell reorganization and cell-cell repulsion.<ref>PMID:21135139</ref> <ref>PMID:22169477</ref>
+
[https://www.uniprot.org/uniprot/PTN1_HUMAN PTN1_HUMAN] Tyrosine-protein phosphatase which acts as a regulator of endoplasmic reticulum unfolded protein response. Mediates dephosphorylation of EIF2AK3/PERK; inactivating the protein kinase activity of EIF2AK3/PERK. May play an important role in CKII- and p60c-src-induced signal transduction cascades. May regulate the EFNA5-EPHA3 signaling pathway which modulates cell reorganization and cell-cell repulsion.<ref>PMID:21135139</ref> <ref>PMID:22169477</ref>
 +
 
 +
==See Also==
 +
*[[Tyrosine phosphatase 3D structures|Tyrosine phosphatase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Protein-tyrosine-phosphatase]]
+
[[Category: Homo sapiens]]
-
[[Category: Biel, J T]]
+
[[Category: Large Structures]]
-
[[Category: Brandao-Neto, J]]
+
[[Category: Biel JT]]
-
[[Category: Delft, F von]]
+
[[Category: Brandao-Neto J]]
-
[[Category: Fraser, J S]]
+
[[Category: Fraser JS]]
-
[[Category: Hill, Z B]]
+
[[Category: Hill ZB]]
-
[[Category: Kang, E]]
+
[[Category: Kang E]]
-
[[Category: Keedy, D A]]
+
[[Category: Keedy DA]]
-
[[Category: Rettenmaier, T J]]
+
[[Category: Rettenmaier TJ]]
-
[[Category: Wells, J A]]
+
[[Category: Wells JA]]
-
[[Category: Allostery]]
+
[[Category: Von Delft F]]
-
[[Category: Enzyme]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Multiconformer]]
+
-
[[Category: Pandda]]
+
-
[[Category: Protein tyrosine phosphatase]]
+
-
[[Category: Protein tyrosine phosphatase 1b]]
+
-
[[Category: Ptp]]
+
-
[[Category: Ptp1b]]
+
-
[[Category: Sgc - diamond i04-1 fragment screening]]
+

Current revision

PanDDA analysis group deposition -- Crystal structure of PTP1B in complex with compound_FMOPL000514a

PDB ID 5qe4

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools