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4exw

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Current revision (04:21, 7 October 2022) (edit) (undo)
 
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==The structure of DdrB from Deinococcus: a new fold for single-stranded DNA binding proteins.==
==The structure of DdrB from Deinococcus: a new fold for single-stranded DNA binding proteins.==
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<StructureSection load='4exw' size='340' side='right' caption='[[4exw]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
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<StructureSection load='4exw' size='340' side='right'caption='[[4exw]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4exw]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Deigd Deigd]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3kdv 3kdv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4EXW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4EXW FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4exw]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_geothermalis_DSM_11300 Deinococcus geothermalis DSM 11300]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3kdv 3kdv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4EXW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4EXW FirstGlance]. <br>
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</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ddrB, Dgeo_0295 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=319795 DEIGD])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4exw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4exw OCA], [https://pdbe.org/4exw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4exw RCSB], [https://www.ebi.ac.uk/pdbsum/4exw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4exw ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4exw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4exw OCA], [http://pdbe.org/4exw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4exw RCSB], [http://www.ebi.ac.uk/pdbsum/4exw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4exw ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/DDRB_DEIGD DDRB_DEIGD]] ssDNA-binding protein that probably contributes to the ionizing radiation resistance of D.geothermalis. Plays a role in DNA repair and genome reconstitution, in a RecA-independent process, and is necessary for recovery from severe genomic fragmentation as a result of exposure to severe levels of ionizing radiation (Probable). Binds single-stranded DNA but not duplex DNA.
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[https://www.uniprot.org/uniprot/DDRB_DEIGD DDRB_DEIGD] ssDNA-binding protein that probably contributes to the ionizing radiation resistance of D.geothermalis. Plays a role in DNA repair and genome reconstitution, in a RecA-independent process, and is necessary for recovery from severe genomic fragmentation as a result of exposure to severe levels of ionizing radiation (Probable). Binds single-stranded DNA but not duplex DNA.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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==See Also==
==See Also==
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*[[Single-stranded DNA-binding protein|Single-stranded DNA-binding protein]]
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*[[Single-stranded DNA-binding protein 3D structures|Single-stranded DNA-binding protein 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Deigd]]
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[[Category: Deinococcus geothermalis DSM 11300]]
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[[Category: Junop, M S]]
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[[Category: Large Structures]]
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[[Category: Sugiman-Marangos, S]]
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[[Category: Junop MS]]
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[[Category: Anti-parallel beta-barrel]]
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[[Category: Sugiman-Marangos S]]
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[[Category: Dna annealing]]
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[[Category: Dna binding]]
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[[Category: Dna binding protein]]
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[[Category: Pentamer]]
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Current revision

The structure of DdrB from Deinococcus: a new fold for single-stranded DNA binding proteins.

PDB ID 4exw

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