This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6fbc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:26, 9 May 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==KlenTaq DNA polymerase processing a modified primer - bearing the modification at the 3'-terminus of the primer.==
==KlenTaq DNA polymerase processing a modified primer - bearing the modification at the 3'-terminus of the primer.==
-
<StructureSection load='6fbc' size='340' side='right' caption='[[6fbc]], [[Resolution|resolution]] 1.54&Aring;' scene=''>
+
<StructureSection load='6fbc' size='340' side='right'caption='[[6fbc]], [[Resolution|resolution]] 1.54&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6fbc]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_25104 Atcc 25104]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FBC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6FBC FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6fbc]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_aquaticus Thermus aquaticus] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FBC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6FBC FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=XG4:2-DEOXY-5-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]AMINO}PHOSPHORYL]GUANOSINE'>XG4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.54&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=D4B:'>D4B</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=D4B:[(2~{R},3~{S},5~{R})-5-[4-azanyl-5-[2-(4-ethynylphenyl)ethynyl]-2-oxidanylidene-pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methyl+dihydrogen+phosphate'>D4B</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=XG4:2-DEOXY-5-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]AMINO}PHOSPHORYL]GUANOSINE'>XG4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">polA, pol1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=271 ATCC 25104])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6fbc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fbc OCA], [https://pdbe.org/6fbc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6fbc RCSB], [https://www.ebi.ac.uk/pdbsum/6fbc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6fbc ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6fbc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fbc OCA], [http://pdbe.org/6fbc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6fbc RCSB], [http://www.ebi.ac.uk/pdbsum/6fbc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6fbc ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DPO1_THEAQ DPO1_THEAQ]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 19:
</div>
</div>
<div class="pdbe-citations 6fbc" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 6fbc" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 25104]]
+
[[Category: Large Structures]]
-
[[Category: DNA-directed DNA polymerase]]
+
[[Category: Synthetic construct]]
-
[[Category: Diederichs, K]]
+
[[Category: Thermus aquaticus]]
-
[[Category: Kropp, H M]]
+
[[Category: Diederichs K]]
-
[[Category: Marx, A]]
+
[[Category: Kropp HM]]
-
[[Category: Dna binding protein]]
+
[[Category: Marx A]]
-
[[Category: Dna polymerase]]
+
-
[[Category: Klentaq]]
+
-
[[Category: Klentaq dna polymerase]]
+
-
[[Category: Modified nucleotide]]
+

Current revision

KlenTaq DNA polymerase processing a modified primer - bearing the modification at the 3'-terminus of the primer.

PDB ID 6fbc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/6fbc"
Personal tools