This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ybn

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:49, 20 December 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
==Nitrate X-ray induced reduction on HEWL crystals (28.6 MGy)==
==Nitrate X-ray induced reduction on HEWL crystals (28.6 MGy)==
-
<StructureSection load='2ybn' size='340' side='right' caption='[[2ybn]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+
<StructureSection load='2ybn' size='340' side='right'caption='[[2ybn]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2ybn]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YBN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YBN FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2ybn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YBN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YBN FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NO2:NITRITE+ION'>NO2</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1w6z|1w6z]], [[1kxx|1kxx]], [[2ybi|2ybi]], [[4lyo|4lyo]], [[3lyo|3lyo]], [[1kip|1kip]], [[1t6v|1t6v]], [[1ic7|1ic7]], [[1vds|1vds]], [[1lzt|1lzt]], [[1kir|1kir]], [[2xbr|2xbr]], [[1lys|1lys]], [[1bwj|1bwj]], [[132l|132l]], [[1e8l|1e8l]], [[1yil|1yil]], [[1heo|1heo]], [[1sfg|1sfg]], [[1kxw|1kxw]], [[2x0a|2x0a]], [[2c8o|2c8o]], [[1yl1|1yl1]], [[1sf4|1sf4]], [[1g7l|1g7l]], [[1ior|1ior]], [[1h87|1h87]], [[1ljg|1ljg]], [[3lyt|3lyt]], [[1dpx|1dpx]], [[1iot|1iot]], [[1v7s|1v7s]], [[1ja6|1ja6]], [[1jis|1jis]], [[1ir8|1ir8]], [[2w1m|2w1m]], [[1uic|1uic]], [[1xgq|1xgq]], [[1ykz|1ykz]], [[1uie|1uie]], [[2war|2war]], [[1lji|1lji]], [[8lyz|8lyz]], [[1lj3|1lj3]], [[1dpw|1dpw]], [[2lyo|2lyo]], [[2iff|2iff]], [[1bwi|1bwi]], [[1g7h|1g7h]], [[1jj0|1jj0]], [[1lks|1lks]], [[1rfp|1rfp]], [[5lyt|5lyt]], [[1jiy|1jiy]], [[1sfb|1sfb]], [[1iee|1iee]], [[1xei|1xei]], [[1ir7|1ir7]], [[1xek|1xek]], [[1hel|1hel]], [[1at6|1at6]], [[1ljf|1ljf]], [[1mlc|1mlc]], [[1f10|1f10]], [[2b5z|2b5z]], [[193l|193l]], [[1lsz|1lsz]], [[1ljk|1ljk]], [[6lyt|6lyt]], [[1sq2|1sq2]], [[1vdq|1vdq]], [[1zmy|1zmy]], [[2ybh|2ybh]], [[2d91|2d91]], [[1lje|1lje]], [[2xth|2xth]], [[1b2k|1b2k]], [[1lze|1lze]], [[2ybj|2ybj]], [[1aki|1aki]], [[1hen|1hen]], [[1uia|1uia]], [[1yik|1yik]], [[1xfp|1xfp]], [[2d6b|2d6b]], [[1lpi|1lpi]], [[1ndg|1ndg]], [[1flw|1flw]], [[1lsd|1lsd]], [[2blx|2blx]], [[6lyz|6lyz]], [[1nbz|1nbz]], [[1lsg|1lsg]], [[4lyt|4lyt]], [[1ved|1ved]], [[3hfm|3hfm]], [[1jit|1jit]], [[1lzn|1lzn]], [[1lyz|1lyz]], [[1wtn|1wtn]], [[1ja2|1ja2]], [[1uuz|1uuz]], [[2xbs|2xbs]], [[2d4i|2d4i]], [[2fbb|2fbb]], [[2lym|2lym]], [[1fdl|1fdl]], [[1gxx|1gxx]], [[1lz9|1lz9]], [[1lse|1lse]], [[1lzh|1lzh]], [[1lsm|1lsm]], [[3lym|3lym]], [[7lyz|7lyz]], [[1jj3|1jj3]], [[1yky|1yky]], [[1t3p|1t3p]], [[1heq|1heq]], [[1kiq|1kiq]], [[2lzh|2lzh]], [[1uih|1uih]], [[1kxy|1kxy]], [[2w1l|2w1l]], [[2bly|2bly]], [[1b0d|1b0d]], [[1g7j|1g7j]], [[1bhz|1bhz]], [[1her|1her]], [[1wtm|1wtm]], [[1hep|1hep]], [[1ioq|1ioq]], [[1nby|1nby]], [[1jtt|1jtt]], [[1qio|1qio]], [[1lza|1lza]], [[1xgp|1xgp]], [[1ps5|1ps5]], [[1gwd|1gwd]], [[1v7t|1v7t]], [[1jpo|1jpo]], [[1h6m|1h6m]], [[1dqj|1dqj]], [[2a7d|2a7d]], [[1j1p|1j1p]], [[2c8p|2c8p]], [[1z55|1z55]], [[1ljj|1ljj]], [[1lsb|1lsb]], [[1f0w|1f0w]], [[2w1x|2w1x]], [[1lzg|1lzg]], [[1flq|1flq]], [[1lzc|1lzc]], [[1jj1|1jj1]], [[2ybl|2ybl]], [[1rcm|1rcm]], [[1uid|1uid]], [[1yqv|1yqv]], [[1hsx|1hsx]], [[1bgi|1bgi]], [[1lcn|1lcn]], [[1lzd|1lzd]], [[1hew|1hew]], [[2cds|2cds]], [[2vb1|2vb1]], [[2aub|2aub]], [[1hf4|1hf4]], [[1uib|1uib]], [[1ir9|1ir9]], [[2cgi|2cgi]], [[1j1x|1j1x]], [[1rjc|1rjc]], [[1ios|1ios]], [[1uc0|1uc0]], [[1azf|1azf]], [[1ljh|1ljh]], [[1ic4|1ic4]], [[4lyz|4lyz]], [[1gpq|1gpq]], [[2a6u|2a6u]], [[2d4k|2d4k]], [[1xej|1xej]], [[1ja7|1ja7]], [[1mel|1mel]], [[1ri8|1ri8]], [[1uig|1uig]], [[1bvx|1bvx]], [[1qtk|1qtk]], [[1c10|1c10]], [[1lkr|1lkr]], [[1lyo|1lyo]], [[2xjw|2xjw]], [[1hsw|1hsw]], [[1n4f|1n4f]], [[2w1y|2w1y]], [[1jto|1jto]], [[1g7m|1g7m]], [[1sf7|1sf7]], [[1lsf|1lsf]], [[1fn5|1fn5]], [[5lyz|5lyz]], [[2d4j|2d4j]], [[1c08|1c08]], [[3lzt|3lzt]], [[1ndm|1ndm]], [[1sf6|1sf6]], [[3lyz|3lyz]], [[1bvk|1bvk]], [[1uif|1uif]], [[2lyz|2lyz]], [[1vau|1vau]], [[1fly|1fly]], [[1lma|1lma]], [[1yl0|1yl0]], [[1j1o|1j1o]], [[1hc0|1hc0]], [[2lzt|2lzt]], [[4lzt|4lzt]], [[1a2y|1a2y]], [[1uco|1uco]], [[1lsy|1lsy]], [[1lsa|1lsa]], [[1ic5|1ic5]], [[1p2c|1p2c]], [[5lym|5lym]], [[1gxv|1gxv]], [[1ua6|1ua6]], [[1at5|1at5]], [[1f3j|1f3j]], [[1vat|1vat]], [[1lj4|1lj4]], [[1hem|1hem]], [[1vfb|1vfb]], [[1ja4|1ja4]], [[4lym|4lym]], [[2a7f|2a7f]], [[194l|194l]], [[1flu|1flu]], [[1lz8|1lz8]], [[1ykx|1ykx]], [[1bwh|1bwh]], [[2hfm|2hfm]], [[1vdt|1vdt]], [[1io5|1io5]], [[1lsn|1lsn]], [[1lzb|1lzb]], [[2bpu|2bpu]], [[1g7i|1g7i]], [[1lsc|1lsc]], [[1vdp|1vdp]], [[2ybm|2ybm]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NO2:NITRITE+ION'>NO2</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ybn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ybn OCA], [https://pdbe.org/2ybn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ybn RCSB], [https://www.ebi.ac.uk/pdbsum/2ybn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ybn ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ybn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ybn OCA], [http://pdbe.org/2ybn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ybn RCSB], [http://www.ebi.ac.uk/pdbsum/2ybn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ybn ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
+
[https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 28: Line 27:
</StructureSection>
</StructureSection>
[[Category: Gallus gallus]]
[[Category: Gallus gallus]]
-
[[Category: Lysozyme]]
+
[[Category: Large Structures]]
-
[[Category: Carmichael, I]]
+
[[Category: Carmichael I]]
-
[[Category: Garman, E F]]
+
[[Category: De la Mora E]]
-
[[Category: Mora, E De la]]
+
[[Category: Garman EF]]
-
[[Category: Dose tolerance]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Nitrate reduction]]
+

Current revision

Nitrate X-ray induced reduction on HEWL crystals (28.6 MGy)

PDB ID 2ybn

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2ybn"
Personal tools