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2r6h

From Proteopedia

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[[Image:2r6h.jpg|left|200px]]
 
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{{Structure
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==Crystal structure of the domain comprising the NAD binding and the FAD binding regions of the NADH:ubiquinone oxidoreductase, Na translocating, F subunit from Porphyromonas gingivalis==
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|PDB= 2r6h |SIZE=350|CAPTION= <scene name='initialview01'>2r6h</scene>, resolution 2.95&Aring;
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<StructureSection load='2r6h' size='340' side='right'caption='[[2r6h]], [[Resolution|resolution]] 2.95&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
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<table><tr><td colspan='2'>[[2r6h]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Porgi Porgi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R6H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R6H FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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|GENE= nqrF, PG_2177 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242619 Porphyromonas gingivalis W83])
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00970 FAD_binding_6], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00175 NAD_binding_1], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG2375 ViuB]</span>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">nqrF, PG_2177 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242619 PORGI])</td></tr>
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|RELATEDENTRY=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r6h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r6h OCA], [https://pdbe.org/2r6h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r6h RCSB], [https://www.ebi.ac.uk/pdbsum/2r6h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r6h ProSAT], [https://www.topsan.org/Proteins/MCSG/2r6h TOPSAN]</span></td></tr>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2r6h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r6h OCA], [http://www.ebi.ac.uk/pdbsum/2r6h PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2r6h RCSB]</span>
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</table>
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}}
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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'''Crystal structure of the domain comprising the NAD binding and the FAD binding regions of the NADH:ubiquinone oxidoreductase, Na translocating, F subunit from Porphyromonas gingivalis'''
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r6/2r6h_consurf.spt"</scriptWhenChecked>
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==About this Structure==
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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2R6H is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Porphyromonas_gingivalis_w83 Porphyromonas gingivalis w83]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R6H OCA].
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Porphyromonas gingivalis w83]]
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</jmolCheckbox>
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[[Category: Single protein]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r6h ConSurf].
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[[Category: Joachimiak, A.]]
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<div style="clear:both"></div>
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[[Category: Kim, Y.]]
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__TOC__
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[[Category: MCSG, Midwest Center for Structural Genomics.]]
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</StructureSection>
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[[Category: Moy, S.]]
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[[Category: Large Structures]]
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[[Category: Mulligan, R.]]
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[[Category: Porgi]]
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[[Category: alpha-beta-alpha sandwich]]
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[[Category: Joachimiak, A]]
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[[Category: iron]]
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[[Category: Kim, Y]]
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[[Category: iron-sulfur]]
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[[Category: Structural genomic]]
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[[Category: mcsg]]
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[[Category: Moy, S]]
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[[Category: metal-binding]]
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[[Category: Mulligan, R]]
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[[Category: midwest center for structural genomic]]
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[[Category: Alpha-beta-alpha sandwich]]
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[[Category: oxidoreductase]]
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[[Category: Iron]]
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[[Category: protein structure initiative]]
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[[Category: Iron-sulfur]]
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[[Category: psi-2]]
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[[Category: Mcsg]]
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[[Category: structural genomic]]
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[[Category: Metal-binding]]
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[[Category: ubiquinone]]
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[[Category: Oxidoreductase]]
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[[Category: PSI, Protein structure initiative]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:57:01 2008''
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[[Category: Ubiquinone]]

Current revision

Crystal structure of the domain comprising the NAD binding and the FAD binding regions of the NADH:ubiquinone oxidoreductase, Na translocating, F subunit from Porphyromonas gingivalis

PDB ID 2r6h

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OCA

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