This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6dc2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:21, 4 October 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of Desulfovibrio vulgaris carbon monoxide dehydrogenase C301S variant==
==Crystal structure of Desulfovibrio vulgaris carbon monoxide dehydrogenase C301S variant==
-
<StructureSection load='6dc2' size='340' side='right' caption='[[6dc2]], [[Resolution|resolution]] 1.99&Aring;' scene=''>
+
<StructureSection load='6dc2' size='340' side='right'caption='[[6dc2]], [[Resolution|resolution]] 1.99&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6dc2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_29579 Atcc 29579]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DC2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6DC2 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6dc2]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DC2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6DC2 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=XCC:FE(4)-NI(1)-S(4)+CLUSTER'>XCC</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.992&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cooS, DVU_2098 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=881 ATCC 29579])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=XCC:FE(4)-NI(1)-S(4)+CLUSTER'>XCC</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Anaerobic_carbon-monoxide_dehydrogenase Anaerobic carbon-monoxide dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.7.4 1.2.7.4] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6dc2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dc2 OCA], [https://pdbe.org/6dc2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6dc2 RCSB], [https://www.ebi.ac.uk/pdbsum/6dc2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6dc2 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6dc2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dc2 OCA], [http://pdbe.org/6dc2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6dc2 RCSB], [http://www.ebi.ac.uk/pdbsum/6dc2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6dc2 ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q72A99_DESVH Q72A99_DESVH]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 18: Line 19:
</div>
</div>
<div class="pdbe-citations 6dc2" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 6dc2" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Carbon monoxide dehydrogenase 3D structures|Carbon monoxide dehydrogenase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Anaerobic carbon-monoxide dehydrogenase]]
+
[[Category: Desulfovibrio vulgaris]]
-
[[Category: Atcc 29579]]
+
[[Category: Large Structures]]
-
[[Category: Drennan, C L]]
+
[[Category: Drennan CL]]
-
[[Category: Wittenborn, E C]]
+
[[Category: Wittenborn EC]]
-
[[Category: Metalloenzyme]]
+
-
[[Category: Oxidoreductase]]
+

Current revision

Crystal structure of Desulfovibrio vulgaris carbon monoxide dehydrogenase C301S variant

PDB ID 6dc2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/6dc2"
Personal tools