2yv5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:07, 23 October 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of Yjeq from Aquifex aeolicus==
==Crystal structure of Yjeq from Aquifex aeolicus==
-
<StructureSection load='2yv5' size='340' side='right' caption='[[2yv5]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
<StructureSection load='2yv5' size='340' side='right'caption='[[2yv5]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2yv5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"aquifex_aeolicus"_huber_and_stetter_2001 "aquifex aeolicus" huber and stetter 2001]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YV5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YV5 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2yv5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YV5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YV5 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">YjeQ ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 "Aquifex aeolicus" Huber and Stetter 2001])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yv5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yv5 OCA], [http://pdbe.org/2yv5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yv5 RCSB], [http://www.ebi.ac.uk/pdbsum/2yv5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2yv5 ProSAT], [http://www.topsan.org/Proteins/RSGI/2yv5 TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yv5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yv5 OCA], [https://pdbe.org/2yv5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yv5 RCSB], [https://www.ebi.ac.uk/pdbsum/2yv5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yv5 ProSAT], [https://www.topsan.org/Proteins/RSGI/2yv5 TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/A4PIH2_AQUAO A4PIH2_AQUAO]] May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover.[HAMAP-Rule:MF_01820][SAAS:SAAS00064561]
+
[https://www.uniprot.org/uniprot/RSGA_AQUAE RSGA_AQUAE] One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit.[HAMAP-Rule:MF_01820]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 15: Line 15:
<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yv/2yv5_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yv/2yv5_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 22: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Aquifex aeolicus huber and stetter 2001]]
+
[[Category: Aquifex aeolicus]]
-
[[Category: Hanawa-Suetsugu, K]]
+
[[Category: Large Structures]]
-
[[Category: Kaminishi, T]]
+
[[Category: Hanawa-Suetsugu K]]
-
[[Category: Structural genomic]]
+
[[Category: Kaminishi T]]
-
[[Category: Shirouzu, M]]
+
[[Category: Shirouzu M]]
-
[[Category: Takemoto, C]]
+
[[Category: Takemoto C]]
-
[[Category: Terada, T]]
+
[[Category: Terada T]]
-
[[Category: Wang, H]]
+
[[Category: Wang H]]
-
[[Category: Yokoyama, S]]
+
[[Category: Yokoyama S]]
-
[[Category: Gtpase]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: National project on protein structural and functional analyse]]
+
-
[[Category: Nppsfa]]
+
-
[[Category: Permutation]]
+
-
[[Category: Rsgi]]
+

Current revision

Crystal structure of Yjeq from Aquifex aeolicus

PDB ID 2yv5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2yv5"
Personal tools