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| | ==Crystal structure of PH1033 from Pyrococcus horikoshii OT3== | | ==Crystal structure of PH1033 from Pyrococcus horikoshii OT3== |
| - | <StructureSection load='2zbn' size='340' side='right' caption='[[2zbn]], [[Resolution|resolution]] 2.00Å' scene=''> | + | <StructureSection load='2zbn' size='340' side='right'caption='[[2zbn]], [[Resolution|resolution]] 2.00Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[2zbn]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZBN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZBN FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2zbn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZBN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZBN FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zbn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zbn OCA], [http://pdbe.org/2zbn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zbn RCSB], [http://www.ebi.ac.uk/pdbsum/2zbn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2zbn ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> |
| | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zbn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zbn OCA], [https://pdbe.org/2zbn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zbn RCSB], [https://www.ebi.ac.uk/pdbsum/2zbn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zbn ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Y1033_PYRHO Y1033_PYRHO] |
| | == Evolutionary Conservation == | | == Evolutionary Conservation == |
| | [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Pyrococcus horikoshii]] | + | [[Category: Large Structures]] |
| - | [[Category: Kunishima, N]] | + | [[Category: Pyrococcus horikoshii OT3]] |
| - | [[Category: Structural genomic]] | + | [[Category: Kunishima N]] |
| - | [[Category: Sugahara, M]] | + | [[Category: Sugahara M]] |
| - | [[Category: National project on protein structural and functional analyse]]
| + | |
| - | [[Category: Nppsfa]]
| + | |
| - | [[Category: Pyrococcus horikoshii ot3]]
| + | |
| - | [[Category: Rsgi]]
| + | |
| - | [[Category: Unknown function]]
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| Structural highlights
Function
Y1033_PYRHO
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
Protein crystallization is still a major bottleneck in structural biology. As the current methodology of protein crystallization is a type of screening, it is usually difficult to crystallize important target proteins. It was thought that hetero-epitaxic growth from the surface of a mineral crystal acting as a nucleant would be an effective enhancer of protein crystallization. However, in spite of almost two decades of effort, a generally applicable hetero-epitaxic nucleant for protein crystallization has yet to be found. Here we introduce the first candidate for a universal hetero-epitaxic nucleant, microporous zeolite: a synthetic aluminosilicate crystalline polymer with regular micropores. It promotes a form-selective crystal nucleation of proteins and acts as a crystallization catalyst. The most successful zeolite nucleant was molecular sieve type 5A with a pore size of 5 A and with bound Ca2+ ions. The zeolite-mediated crystallization improved the crystal quality in five out of six proteins tested. It provided new crystal forms with better resolution in two cases, larger crystals in one case, and zeolite-dependent crystal formations in two cases. The hetero-epitaxic growth of the zeolite-mediated crystals was confirmed by a crystal-packing analysis which revealed a layer-like structure in the crystal lattice.
Nucleant-mediated protein crystallization with the application of microporous synthetic zeolites.,Sugahara M, Asada Y, Morikawa Y, Kageyama Y, Kunishima N Acta Crystallogr D Biol Crystallogr. 2008 Jun;64(Pt 6):686-95. Epub 2008, May 14. PMID:18560157[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Sugahara M, Asada Y, Morikawa Y, Kageyama Y, Kunishima N. Nucleant-mediated protein crystallization with the application of microporous synthetic zeolites. Acta Crystallogr D Biol Crystallogr. 2008 Jun;64(Pt 6):686-95. Epub 2008, May 14. PMID:18560157 doi:10.1107/S0907444908009980
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