This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2rek

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:21, 21 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2rek.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of tetR-family transcriptional regulator==
-
|PDB= 2rek |SIZE=350|CAPTION= <scene name='initialview01'>2rek</scene>, resolution 1.86&Aring;
+
<StructureSection load='2rek' size='340' side='right'caption='[[2rek]], [[Resolution|resolution]] 1.86&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>
+
<table><tr><td colspan='2'>[[2rek]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_coelicolor_A3(2) Streptomyces coelicolor A3(2)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2REK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2REK FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.86&#8491;</td></tr>
-
|GENE= SCO5068 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2 Bacteria])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00440 TetR_N], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1309 AcrR]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rek FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rek OCA], [https://pdbe.org/2rek PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rek RCSB], [https://www.ebi.ac.uk/pdbsum/2rek PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rek ProSAT], [https://www.topsan.org/Proteins/MCSG/2rek TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rek FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rek OCA], [http://www.ebi.ac.uk/pdbsum/2rek PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2rek RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/Q9ADD9_STRCO Q9ADD9_STRCO]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/re/2rek_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rek ConSurf].
 +
<div style="clear:both"></div>
-
'''Crystal structure of tetR-family transcriptional regulator'''
+
==See Also==
-
 
+
*[[Tetracycline repressor protein 3D structures|Tetracycline repressor protein 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
2REK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2REK OCA].
+
[[Category: Large Structures]]
-
[[Category: Bacteria]]
+
[[Category: Dong A]]
-
[[Category: Single protein]]
+
[[Category: Edwards AM]]
-
[[Category: Dong, A.]]
+
[[Category: Gu J]]
-
[[Category: Edwards, A M.]]
+
[[Category: Joachimiak A]]
-
[[Category: Gu, J.]]
+
[[Category: Savchenko A]]
-
[[Category: Joachimiak, A.]]
+
[[Category: Xu X]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
-
[[Category: Savchenko, A.]]
+
-
[[Category: Xu, X.]]
+
-
[[Category: cr]]
+
-
[[Category: dna-binding]]
+
-
[[Category: mcsg]]
+
-
[[Category: midwest center for structural genomic]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi-2]]
+
-
[[Category: sad]]
+
-
[[Category: structural genomic]]
+
-
[[Category: sulfur]]
+
-
[[Category: tetr-family]]
+
-
[[Category: transcription regulation]]
+
-
[[Category: transcriptional regulator]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:59:31 2008''
+

Current revision

Crystal structure of tetR-family transcriptional regulator

PDB ID 2rek

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2rek"
Personal tools