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| | ==Solution NMR structure of the C-terminal extension of two bacterial light, oxygen, voltage (LOV) photoreceptor proteins from Pseudomonas putida== | | ==Solution NMR structure of the C-terminal extension of two bacterial light, oxygen, voltage (LOV) photoreceptor proteins from Pseudomonas putida== |
| - | <StructureSection load='2yom' size='340' side='right' caption='[[2yom]], [[NMR_Ensembles_of_Models | 10 NMR models]]' scene=''> | + | <StructureSection load='2yom' size='340' side='right'caption='[[2yom]]' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[2yom]] is a 1 chain structure. The March 2015 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Phototropin'' by David Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2015_3 10.2210/rcsb_pdb/mom_2015_3]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YOM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YOM FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2yom]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida_KT2440 Pseudomonas putida KT2440]. The March 2015 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Phototropin'' by David Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2015_3 10.2210/rcsb_pdb/mom_2015_3]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YOM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YOM FirstGlance]. <br> |
| - | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 10 models</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2yon|2yon]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yom FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yom OCA], [http://pdbe.org/2yom PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yom RCSB], [http://www.ebi.ac.uk/pdbsum/2yom PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2yom ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yom FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yom OCA], [https://pdbe.org/2yom PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yom RCSB], [https://www.ebi.ac.uk/pdbsum/2yom PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yom ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Q88E39_PSEPK Q88E39_PSEPK] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| | + | [[Category: Large Structures]] |
| | [[Category: Phototropin]] | | [[Category: Phototropin]] |
| | + | [[Category: Pseudomonas putida KT2440]] |
| | [[Category: RCSB PDB Molecule of the Month]] | | [[Category: RCSB PDB Molecule of the Month]] |
| - | [[Category: Hartmann, R]] | + | [[Category: Hartmann R]] |
| - | [[Category: Jaeger, K]] | + | [[Category: Jaeger K]] |
| - | [[Category: Krauss, U]] | + | [[Category: Krauss U]] |
| - | [[Category: Lecher, J]] | + | [[Category: Lecher J]] |
| - | [[Category: Rani, R]] | + | [[Category: Rani R]] |
| - | [[Category: Willbold, D]] | + | [[Category: Willbold D]] |
| - | [[Category: Photoreceptor]]
| + | |
| - | [[Category: Signaling protein]]
| + | |
| Structural highlights
Function
Q88E39_PSEPK
Publication Abstract from PubMed
In bacteria and fungi, various light, oxygen, voltage (LOV) sensory systems that lack a fused effector domain but instead contain only short N- and C-terminal extensions flanking the LOV core exist. In the prokaryotic kingdom, this so-called "short" LOV protein family represents the third largest LOV photoreceptor family. This observation prompted us to study their distribution and phylogeny as well as their photochemical and structural properties in more detail. We recently described the slow and fast reverting "short" LOV proteins PpSB1-LOV and PpSB2-LOV from Pseudomonas putida KT2440 whose adduct state lifetimes varied by 3 orders of magnitude [Jentzsch, K., Wirtz, A., Circolone, F., Drepper, T., Losi, A., Gartner, W., Jaeger, K. E., and Krauss, U. (2009) Biochemistry 48, 10321-10333]. We now present evidence of the conservation of similar fast and slow-reverting "short" LOV proteins in different Pseudomonas species. Truncation studies conducted with PpSB1-LOV and PpSB2-LOV suggested that the short N- and C-terminal extensions outside of the LOV core domain are essential for the structural integrity and folding of the two proteins. While circular dichroism and solution nuclear magnetic resonance experiments verify that the two short C-terminal extensions of PpSB1-LOV and PpSB2-LOV form independently folding helical structures in solution, bioinformatic analyses imply the formation of coiled coils of the respective structural elements in the context of the dimeric full-length proteins. Given their prototypic architecture, conserved in most more complex LOV photoreceptor systems, "short" LOV proteins could represent ideally suited building blocks for the design of genetically encoded photoswitches (i.e., LOV-based optogenetic tools).
Conservation of Dark Recovery Kinetic Parameters and Structural Features in the Pseudomonadaceae "Short" Light, Oxygen, Voltage (LOV) Protein Family: Implications for the Design of LOV-Based Optogenetic Tools.,Rani R, Jentzsch K, Lecher J, Hartmann R, Willbold D, Jaeger KE, Krauss U Biochemistry. 2013 Jul 2;52(26):4460-73. doi: 10.1021/bi400311r. Epub 2013 Jun, 21. PMID:23746326[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Rani R, Jentzsch K, Lecher J, Hartmann R, Willbold D, Jaeger KE, Krauss U. Conservation of Dark Recovery Kinetic Parameters and Structural Features in the Pseudomonadaceae "Short" Light, Oxygen, Voltage (LOV) Protein Family: Implications for the Design of LOV-Based Optogenetic Tools. Biochemistry. 2013 Jul 2;52(26):4460-73. doi: 10.1021/bi400311r. Epub 2013 Jun, 21. PMID:23746326 doi:10.1021/bi400311r
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