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| ==Crystal structure of vitamin D hydroxylase cytochrome P450 105A1 (R84A mutant)== | | ==Crystal structure of vitamin D hydroxylase cytochrome P450 105A1 (R84A mutant)== |
- | <StructureSection load='2zby' size='340' side='right' caption='[[2zby]], [[Resolution|resolution]] 1.60Å' scene=''> | + | <StructureSection load='2zby' size='340' side='right'caption='[[2zby]], [[Resolution|resolution]] 1.60Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[2zby]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"actinomyces_griseolus"_waksman_1923 "actinomyces griseolus" waksman 1923]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZBY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZBY FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2zby]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_griseolus Streptomyces griseolus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZBY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZBY FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2zbx|2zbx]], [[2zbz|2zbz]]</td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CYP105A1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1909 "Actinomyces griseolus" Waksman 1923])</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zby FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zby OCA], [https://pdbe.org/2zby PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zby RCSB], [https://www.ebi.ac.uk/pdbsum/2zby PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zby ProSAT]</span></td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Unspecific_monooxygenase Unspecific monooxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.14.14.1 1.14.14.1] </span></td></tr>
| + | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zby FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zby OCA], [http://pdbe.org/2zby PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zby RCSB], [http://www.ebi.ac.uk/pdbsum/2zby PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2zby ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/CPXE_STRGO CPXE_STRGO] |
| == Evolutionary Conservation == | | == Evolutionary Conservation == |
| [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
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| ==See Also== | | ==See Also== |
- | *[[Cytochrome P450|Cytochrome P450]] | + | *[[Cytochrome P450 3D structures|Cytochrome P450 3D structures]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Actinomyces griseolus waksman 1923]] | + | [[Category: Large Structures]] |
- | [[Category: Unspecific monooxygenase]] | + | [[Category: Streptomyces griseolus]] |
- | [[Category: Hayashi, K]] | + | [[Category: Hayashi K]] |
- | [[Category: Ikushiro, S]] | + | [[Category: Ikushiro S]] |
- | [[Category: Kamakura, M]] | + | [[Category: Kamakura M]] |
- | [[Category: Sakaki, T]] | + | [[Category: Sakaki T]] |
- | [[Category: Shinkyo, R]] | + | [[Category: Shinkyo R]] |
- | [[Category: Shiro, Y]] | + | [[Category: Shiro Y]] |
- | [[Category: Sugimoto, H]] | + | [[Category: Sugimoto H]] |
- | [[Category: Yamada, M]] | + | [[Category: Yamada M]] |
- | [[Category: Yoneda, S]] | + | [[Category: Yoneda S]] |
- | [[Category: Beta prism]]
| + | |
- | [[Category: Heme]]
| + | |
- | [[Category: Iron]]
| + | |
- | [[Category: Metal-binding]]
| + | |
- | [[Category: Monooxygenase]]
| + | |
- | [[Category: Oxidoreductase]]
| + | |
- | [[Category: P450]]
| + | |
| Structural highlights
Function
CPXE_STRGO
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
Vitamin D 3 (VD 3), a prohormone in mammals, plays a crucial role in the maintenance of calcium and phosphorus concentrations in serum. Activation of VD 3 requires 25-hydroxylation in the liver and 1alpha-hydroxylation in the kidney by cytochrome P450 (CYP) enzymes. Bacterial CYP105A1 converts VD 3 into 1alpha,25-dihydroxyvitamin D 3 (1alpha,25(OH) 2D 3) in two independent reactions, despite its low sequence identity with mammalian enzymes (<21% identity). The present study determined the crystal structures of a highly active mutant (R84A) of CYP105A1 from Streptomyces griseolus in complex and not in complex with 1alpha,25(OH) 2D 3. The compound 1alpha,25(OH) 2D 3 is positioned 11 A from the iron atom along the I helix within the pocket. A similar binding mode is observed in the structure of the human CYP2R1-VD 3 complex, indicating a common substrate-binding mechanism for 25-hydroxylation. A comparison with the structure of wild-type CYP105A1 suggests that the loss of two hydrogen bonds in the R84A mutant increases the adaptability of the B' and F helices, creating a transient binding site. Further mutational analysis of the active site reveals that 25- and 1alpha-hydroxylations share residues that participate in these reactions. These results provide the structural basis for understanding the mechanism of the two-step hydroxylation that activates VD 3.
Crystal Structure of CYP105A1 (P450SU-1) in Complex with 1alpha,25-Dihydroxyvitamin D3(,).,Sugimoto H, Shinkyo R, Hayashi K, Yoneda S, Yamada M, Kamakura M, Ikushiro S, Shiro Y, Sakaki T Biochemistry. 2008 Apr 1;47(13):4017-27. Epub 2008 Mar 4. PMID:18314962[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Sugimoto H, Shinkyo R, Hayashi K, Yoneda S, Yamada M, Kamakura M, Ikushiro S, Shiro Y, Sakaki T. Crystal Structure of CYP105A1 (P450SU-1) in Complex with 1alpha,25-Dihydroxyvitamin D3(,). Biochemistry. 2008 Apr 1;47(13):4017-27. Epub 2008 Mar 4. PMID:18314962 doi:http://dx.doi.org/10.1021/bi7023767
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