This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2zu9

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:55, 1 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of mannosyl-3-phosphoglycerate synthase from Pyrococcus horikoshii==
==Crystal structure of mannosyl-3-phosphoglycerate synthase from Pyrococcus horikoshii==
-
<StructureSection load='2zu9' size='340' side='right' caption='[[2zu9]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+
<StructureSection load='2zu9' size='340' side='right'caption='[[2zu9]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2zu9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZU9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZU9 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2zu9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZU9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZU9 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2zu7|2zu7]], [[2zu8|2zu8]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zu9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zu9 OCA], [https://pdbe.org/2zu9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zu9 RCSB], [https://www.ebi.ac.uk/pdbsum/2zu9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zu9 ProSAT]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PH0927 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=53953 'Pyrococcus shinkaii'])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Mannosyl-3-phosphoglycerate_synthase Mannosyl-3-phosphoglycerate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.217 2.4.1.217] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zu9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zu9 OCA], [http://pdbe.org/2zu9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zu9 RCSB], [http://www.ebi.ac.uk/pdbsum/2zu9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2zu9 ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/MPGS_PYRHO MPGS_PYRHO]] Transfers a mannosyl group from GDP-mannose to phosphoglycerate to form mannosyl-3-phosphoglycerate (MPG). The enzyme is absolutely specific for GDP-mannose and 3-phosphoglycerate, and transfers the mannosyl group with retention of configuration.
+
[https://www.uniprot.org/uniprot/MPGS_PYRHO MPGS_PYRHO] Transfers a mannosyl group from GDP-mannose to phosphoglycerate to form mannosyl-3-phosphoglycerate (MPG). The enzyme is absolutely specific for GDP-mannose and 3-phosphoglycerate, and transfers the mannosyl group with retention of configuration.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 25: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Pyrococcus shinkaii]]
+
[[Category: Large Structures]]
-
[[Category: Mannosyl-3-phosphoglycerate synthase]]
+
[[Category: Pyrococcus horikoshii]]
-
[[Category: Kawamura, T]]
+
[[Category: Kawamura T]]
-
[[Category: Tanaka, I]]
+
[[Category: Tanaka I]]
-
[[Category: Watanabe, N]]
+
[[Category: Watanabe N]]
-
[[Category: Cytoplasm]]
+
-
[[Category: Gdp]]
+
-
[[Category: Glycosyltransferase]]
+
-
[[Category: Gt-a fold]]
+
-
[[Category: Gt55]]
+
-
[[Category: Magnesium]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of mannosyl-3-phosphoglycerate synthase from Pyrococcus horikoshii

PDB ID 2zu9

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools