We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

Main Page

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:30, 30 September 2025) (edit) (undo)
 
(69 intermediate revisions not shown.)
Line 1: Line 1:
<table id="tableColumnsMainPage" style="width:100%;border:2px solid #ddd;border-collapse: collapse;table-layout: fixed; ">
<table id="tableColumnsMainPage" style="width:100%;border:2px solid #ddd;border-collapse: collapse;table-layout: fixed; ">
-
<tr><td colspan='4' style="background:#F5F5FC;border:1px solid #ddd;">
+
<tr><td colspan='3' style="background:#F5F5FC;border:1px solid #ddd;">
-
<span style="border:none; margin:0; padding:0.3em; color:#000; font-style: italic;"><b>Because life has more than 2D</b>, Proteopedia helps to understand relationships between structure and function. <b>Proteopedia</b> is a free, collaborative 3D-encyclopedia of proteins & other molecules.</span>
+
<div style="top:+0.2em; font-size:1.2em; padding:5px 5px 5px 10px; float:right;">'''''ISSN 2310-6301'''''</div>
-
<span style="top:+0.2em; font-size:1.2em; padding-right:5px;float:right;">'''''ISSN 2310-6301'''''</span>
+
 
 +
<span style="border:none; margin:0; padding:0.3em; color:#000; font-style: italic; font-size: 1.4em;">
 +
<b>As life is more than 2D</b>, Proteopedia helps to bridge the gap between 3D structure & function of biomacromolecules
 +
</span>
 +
 
 +
<span style="border:none; margin:0; padding:0.3em; color:#000; font-style: italic; font-size: 1.1em;max-width:80%;display:block;">
 +
<b>Proteopedia</b> presents this information in a user-friendly way as a '''collaborative & free 3D-encyclopedia of proteins & other biomolecules.'''
 +
</span>
 +
 
 +
 
</td></tr>
</td></tr>
<tr>
<tr>
-
<th style="padding: 10px;background-color: #33ff7b">Selected Pages</th>
+
<th style="padding: 10px;background-color: #33ff7b">Selected Research Pages</th>
-
<th style="padding: 10px;background-color: #dae4d9">Art on Science</th>
+
<th style="padding: 10px;background-color: #f1b840">In Journals</th>
-
<th style="padding: 10px;background-color: #f1b840">Journals</th>
+
<th style="padding: 10px;background-color: #79baff">Education</th>
<th style="padding: 10px;background-color: #79baff">Education</th>
</tr>
</tr>
-
<tr>
+
<tr valign='top'>
<td style="padding: 5px;"> {{Proteopedia:Featured SEL/{{#expr: {{#time:U}} mod {{Proteopedia:Number of SEL articles}}}}}}</td>
<td style="padding: 5px;"> {{Proteopedia:Featured SEL/{{#expr: {{#time:U}} mod {{Proteopedia:Number of SEL articles}}}}}}</td>
-
<td style="padding: 5px;">{{Proteopedia:Featured ART/{{#expr: {{#time:U}} mod {{Proteopedia:Number of ART articles}}}}}}</td>
 
<td style="padding: 5px;"> {{Proteopedia:Featured JRN/{{#expr: {{#time:U}} mod {{Proteopedia:Number of JRN articles}}}}}}</td>
<td style="padding: 5px;"> {{Proteopedia:Featured JRN/{{#expr: {{#time:U}} mod {{Proteopedia:Number of JRN articles}}}}}}</td>
<td style="padding: 5px;"> {{Proteopedia:Featured EDU/{{#expr: {{#time:U}} mod {{Proteopedia:Number of EDU articles}}}}}}</td>
<td style="padding: 5px;"> {{Proteopedia:Featured EDU/{{#expr: {{#time:U}} mod {{Proteopedia:Number of EDU articles}}}}}}</td>
Line 20: Line 27:
<tr style="font-size: 1.2em; text-align: center;">
<tr style="font-size: 1.2em; text-align: center;">
-
<td style="padding: 10px;background-color: #33ff7b">Other Selected Pages</td>
+
<td style="padding: 10px;background-color: #33ff7b"></td>
-
<td style="padding: 10px;background-color: #dae4d9">More Art on Science</td>
+
<td style="padding: 10px;background-color: #f1b840"></td>
-
<td style="padding: 10px;background-color: #f1b840">Other Journals</td>
+
<td style="padding: 10px;background-color: #79baff"></td>
-
<td style="padding: 10px;background-color: #79baff">More on Education</td>
+
</tr>
</tr>
-
<tr style="font-size: 1.2em; text-align: center;">
+
<tr style="font-size: 1.0em; text-align: center;">
-
<td style="padding: 10px;>How to author pages and contribute to Proteopedia</td>
+
 
-
<td style="padding: 10px;></td>
+
<td style="padding: 10px;>
-
<td style="padding: 10px;>How to get an Interactive 3D Complement for your paper</td>
+
<p>[[Help:Contents#For_authors:_contributing_content|How to add content to Proteopedia]]</p>
-
<td style="padding: 10px;>How to author pages and contribute to Proteopedia</td>
+
<p>[[Proteopedia:Video_Guide|Video Guides]]</p>
 +
<p>[[Who knows]] ...</p>
 +
</td>
 +
 
 +
<td style="padding: 10px;>
 +
<p>[[I3DC|About Interactive 3D Complements - '''I3DCs''']]</p>
 +
<p>[[Proteopedia:I3DC|List of I3DCs]]</p>
 +
<p>[[How to get an I3DC for your paper]]</p>
 +
 
 +
</td>
 +
 
 +
<td style="padding: 10px;>
 +
<p>[[Teaching strategies using Proteopedia]]</p>
 +
<p>[[Teaching_Scenes%2C_Tutorials%2C_and_Educators%27_Pages|Examples of pages for teaching]]</p>
 +
<p>[[Help:Contents#For_authors:_contributing_content|How to add content to Proteopedia]]</p>
 +
</td>
 +
 
</tr>
</tr>
 +
<tr><td colspan='3' >
 +
<table width='100%' style="padding: 10px; background-color: #d7d8f9; font-size: 1.5em;"><tr>
 +
<td>[[Proteopedia:About|About]]</td>
 +
<td>[[Special:Contact|Contact]]</td>
 +
<td>[[Template:MainPageNews|Hot News]]</td>
 +
<td>[[Proteopedia:Table of Contents|Table of Contents]]</td>
 +
<td>[[Proteopedia:Structure Index|Structure Index]]</td>
 +
<td>[[Help:Contents|Help]]</td>
 +
</tr></table>
 +
</td></tr>
</table>
</table>

Current revision

ISSN 2310-6301

As life is more than 2D, Proteopedia helps to bridge the gap between 3D structure & function of biomacromolecules

Proteopedia presents this information in a user-friendly way as a collaborative & free 3D-encyclopedia of proteins & other biomolecules.


Selected Research Pages In Journals Education
About this image
Green Fluorescent Protein

by Eran Hodis
Green fluorescent protein (GFP) is a bioluminescent polypeptide isolated from the jellyfish Aequorea victoria. GFP converts the blue chemiluminescence of aequorin into green fluorescent light. In the laboratory, GFP can be incorporated into a variety of biological systems in order to function as a marker protein. Since its discovery in 1962, GFP has become a significant contributor to the research of monitoring gene expression, localization, mobility, traffic, or interactions between various membrane and cytoplasmic proteins.

>>> Visit this page >>>

About this image
Structural flexibility of the periplasmic protein, FlgA, regulates flagellar P-ring assembly in Salmonella enterica.

H Matsunami, YH Yoon, VA Meshcheryakov, K Namba, FA Samatey. Scientific Reports 2016 doi: 10.1038/srep27399
A periplasmic flagellar chaperone protein, FlgA, is required for P-ring assembly in bacterial flagella of taxa such as Salmonella enterica or Escherichia coli. Here we present the open and closed crystal structures of FlgA from Salmonella enterica serovar Typhimurium, grown under different crystallization conditions. An intramolecular disulfide cross-linked form of FlgA caused a dominant negative effect on motility of the wild-type strain.

>>> Visit this I3DC complement >>>

About this image
Virus Capsid Geometry

The Capsid of a virus is its outer shell or "skin". Viruses have evolved intricate and elegant ways to assemble capsid protein chains into complete, usually spherical capsids, often with icosahedral symmetry. Pictured is an extremely simplified model of a capsid, where a single enlarged atom represents each of the 360 protein chains in the capsid of the Simian Virus 40 (SV40), a member of a group of cancer-causing viruses that has been extensively researched for decades.

>>> See more animations and explanation >>>

How to add content to Proteopedia

Video Guides

Who knows ...

About Interactive 3D Complements - I3DCs

List of I3DCs

How to get an I3DC for your paper

Teaching strategies using Proteopedia

Examples of pages for teaching

How to add content to Proteopedia

About Contact Hot News Table of Contents Structure Index Help

Proteopedia Page Contributors and Editors (what is this?)

Joel L. Sussman, Jaime Prilusky

Personal tools