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| <StructureSection load='' size='350' side='right' caption='Yeast RNA polymerase II elongation complex C complexed with DNA and RNA and Zn+2 (grey) and Mg+2 (green) ions [[3m3y]]. Subunit B1 (grey), B2 (green), B3 (pink), B9 (wheat), B11 (rust), ABC1 (magenta), ABC2 (cyan), ABC3 (red), ABC4 (aqua), ABC5 (blue) (PDB code [[3m3y]]).' scene='RNA_polymerase/Cv/1'> | | <StructureSection load='' size='350' side='right' caption='Yeast RNA polymerase II elongation complex C complexed with DNA and RNA and Zn+2 (grey) and Mg+2 (green) ions [[3m3y]]. Subunit B1 (grey), B2 (green), B3 (pink), B9 (wheat), B11 (rust), ABC1 (magenta), ABC2 (cyan), ABC3 (red), ABC4 (aqua), ABC5 (blue) (PDB code [[3m3y]]).' scene='RNA_polymerase/Cv/1'> |
| + | __TOC__ |
| | | |
| + | ==Function== |
| '''RNA polymerase''' (RNAP, '''DNA primase''', dnaG) catalyzes the addition of nucleotides to RNA during transcription.<br /> | | '''RNA polymerase''' (RNAP, '''DNA primase''', dnaG) catalyzes the addition of nucleotides to RNA during transcription.<br /> |
| '''DNA-dependent RNA polymerase''' catalyzes the transcription of RNA from a DNA template. The DNA-dependent eukaryote RNAP<ref>PMID:18573085</ref> are divided to<br /> | | '''DNA-dependent RNA polymerase''' catalyzes the transcription of RNA from a DNA template. The DNA-dependent eukaryote RNAP<ref>PMID:18573085</ref> are divided to<br /> |
| '''RNAP I''' (or '''Pol I''') which transcribes ribosomal RNA<ref>PMID:14969726</ref>; <br /> | | '''RNAP I''' (or '''Pol I''') which transcribes ribosomal RNA<ref>PMID:14969726</ref>; <br /> |
- | '''RNAP II''' (or '''Pol II''') transcribes DNA and most snRNA and microRNA<ref>PMID:15114340</ref>; <br /> | + | '''RNAP II''' (or '''Pol II''') transcribes DNA and most snRNA and microRNA<ref>PMID:15114340</ref>; See [[RNA Polymerase II]].<br /> |
| '''RNAP III''' (or '''Pol III''') transcribes tRNA and 5S ribosomal RNA<ref>PMID:1452</ref>.<br /> | | '''RNAP III''' (or '''Pol III''') transcribes tRNA and 5S ribosomal RNA<ref>PMID:1452</ref>.<br /> |
- | '''DNA primase''' (DNAP) is RNAP which catalyzes the synthesis of the RNA primer which complements an ssDNA template and initiates DNA synthesis<ref>PMID:11395402</ref>. <br /> | + | '''DNA primase''' (DNAP) is RNAP which catalyzes the synthesis of the RNA primer which complements an ssDNA template and initiates DNA synthesis<ref>PMID:11395402</ref>. The large subunit of promase is called '''p58C'''.<br /> |
| '''dnaG''' is a bacterial DNA primase<ref>PMID:23430154</ref>.<br /> | | '''dnaG''' is a bacterial DNA primase<ref>PMID:23430154</ref>.<br /> |
| For DNA-dependent RNA polymerase see<br /> | | For DNA-dependent RNA polymerase see<br /> |
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| * [[User:Luis E Ramirez-Tapia/T7 RNA polymerase]]<br /> | | * [[User:Luis E Ramirez-Tapia/T7 RNA polymerase]]<br /> |
| * [[Molecular Playground/T7 RNA Polymerase (7 mer int)]].<br /> | | * [[Molecular Playground/T7 RNA Polymerase (7 mer int)]].<br /> |
| + | * [[T7 RNA Polymerase]].<br /> |
| * [[Molecular Playground/Human mtRNA pol]].<br /> | | * [[Molecular Playground/Human mtRNA pol]].<br /> |
| * [[Beta-Prime Subunit of Bacterial RNA Polymerase]]<br /> | | * [[Beta-Prime Subunit of Bacterial RNA Polymerase]]<br /> |
| * [[Transcription and RNA Processing]].<br /> | | * [[Transcription and RNA Processing]].<br /> |
| + | * [[Rifampicin]] |
| | | |
- | '''RNA-dependent RNA polymerase''' catalyzes the replication of RNA from a RNA template<ref>PMID:12016304</ref>. An example is the '''Influenza virus RNA polymerase''' which is composed of 3 subunits. Subunit '''PA''' is involved in cap-snatching. Subunit '''PB1''' is involved in RNA synthesis. Subunit '''PB2''' is involved in RNA replication and transcription. It is implicated in endonuclease cleavage of RNA primers. <scene name='1qln/Rockets_steitz_colors/1'>View of the nucleic acid</scene> ([[1qln]]; blue: nontemplate strand; cyan: template strand; red:RNA).<br /> | + | '''RNA-dependent RNA polymerase''' or '''cap-snatching endonuclease''' or '''replicase''' catalyzes the replication of RNA from a RNA template<ref>PMID:12016304</ref>. An example is the '''Influenza virus RNA polymerase''' which is composed of 3 subunits. Subunit '''PA''' is involved in cap-snatching. Subunit '''PB1''' is involved in RNA synthesis. Subunit '''PB2''' is involved in RNA replication and transcription. It is implicated in endonuclease cleavage of RNA primers. <scene name='1qln/Rockets_steitz_colors/1'>View of the nucleic acid</scene> ([[1qln]]; blue: nontemplate strand; cyan: template strand; red:RNA).<br /> |
| See also [[RNA-directed RNA polymerase]].<br /> | | See also [[RNA-directed RNA polymerase]].<br /> |
| For RNA-dependent RNA polymerase from Hepatitis C virus - NS5B - see<br /> | | For RNA-dependent RNA polymerase from Hepatitis C virus - NS5B - see<br /> |
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| * [[User:Michael Strong/H1N1/PA]]<br /> | | * [[User:Michael Strong/H1N1/PA]]<br /> |
| * [[User:Michael Strong/H1N1/PA/MSA]] | | * [[User:Michael Strong/H1N1/PA/MSA]] |
| + | *[[Sofosbuvir]] |
| + | |
| + | For RNA-dependent RNA polymerase from murine norovirus see<br /> |
| + | * [[Ribavirin1]].<br /> |
| | | |
| '''Poly(A) RNA polymerase''' catalyzes the addition of long poly(A) tails to mRNA without a template<ref>PMID:15047805</ref>. | | '''Poly(A) RNA polymerase''' catalyzes the addition of long poly(A) tails to mRNA without a template<ref>PMID:15047805</ref>. |
- | </StructureSection>
| + | |
| == 3D Structures of RNA polymerase == | | == 3D Structures of RNA polymerase == |
| + | [[RNA polymerase 3D structures]] |
| | | |
- | Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
| + | </StructureSection> |
- | {{#tree:id=OrganizedByTopic|openlevels=0|
| + | |
- | | + | |
- | *'''Prokaryotic DNA-dependent RNAP'''
| + | |
- | | + | |
- | **[[2y0s]] – SsRNAP – ''Sulfolobus shibata''<br />
| + | |
- | **[[1ryq]] - PfRNAP subunit ε’’ - ''Pyrococcus furiosus''<br />
| + | |
- | **[[1go3]] – MjRNAP subunit RPB4, RPB7 - ''Methanocaldococcus jannaschii''<br />
| + | |
- | **[[1iw7]], [[1smy]], [[6asg]] - TtRNAP subunits α,β,β’,ω − ''Thermus thermophilus''<br />
| + | |
- | **[[1doq]] - TtRNAP subunit α<br />
| + | |
- | **[[3lti]]– EcRNAP subunit β fragment – ''Escherichia coli''<br />
| + | |
- | **[[4iqz]] - EcRNAP subunit β’ <br />
| + | |
- | **[[3k4g]], [[1coo]] - EcRNAP subunit α<br />
| + | |
- | **[[1bdf]] - EcRNAP subunit α (mutant) <br />
| + | |
- | **[[3lu0]] - EcRNAP subunits α,β,β’,ω – Electron diffraction<br />
| + | |
- | **[[2krc]] - BsRNAP subunit δ N-terminal – ''Bacillus subtilis'' – NMR<br />
| + | |
- | **[[2ly7]] - BsRNAP subunit β − NMR<br />
| + | |
- | **[[2m4k]] - BsRNAP subunit δ − NMR<br />
| + | |
- | **[[4nc7]], [[4nc8]] - BsRNAP subunit δ <br />
| + | |
- | **[[2max]] - HpRNAP subunit α − ''Helicobacter pylori'' - NMR<br />
| + | |
- | **[[1qyp]] – RNAP II C terminal – ''Thermococcus celer'' – NMR<br />
| + | |
- | **[[3ef0]], [[3ef1]] - SpRNAP II subunit α C terminal – ''Schizosaccharomyces pombe''<br />
| + | |
- | **[[3h0g]] – SpRNAP II<br />
| + | |
- | **[[3ayh]] - SpRNAP III subunit Rpc8+Rpc9<br />
| + | |
- | **[[4kbj]] – MtuRNAP β subunit – ''Mycobacterium tuberculosis''<br />
| + | |
- | **[[5uh7]] - MtuRNAP subunit β’<br />
| + | |
- | **[[4noi]] – RNAP α subunit – ''Campylobacter jejuni''<br />
| + | |
- | **[[1hqm]] – TaRNAP subunits α,β,β’,ω − ''Thermus aquaticus''<br />
| + | |
- | **[[2gho]] - TaRNAP subunits α,β,β’ <br />
| + | |
- | **[[2auj]], [[2auk]] - TaRNAP subunit β’ <br />
| + | |
- | **[[1xpp]] – RNAP subunit L – ''Thermoplasma acidophilum'' <br />
| + | |
- | **[[2waq]], [[2wb1]], [[4ayb]] – SsRNAP <br />
| + | |
- | **[[3e7h]] – VcRNAP subunit β – ''Vibrio cholera''<br />
| + | |
- | **[[1ef4]] – MtRNAP subunit RPB10 – ''Methanothermobacter thermautotrophicus''<br />
| + | |
- | **[[1eik]] - MtRNAP subunit RPB5 – NMR<br />
| + | |
- | **[[4qiw]] – TkRNAP subunits a’’+d+e’+f+h+k+l+n+p – ''Thermococcus kodakarensis''<br />
| + | |
- | **[[4qjf]] - TkRNAP subunits e’+f <br />
| + | |
- | **[[4qjv]] - TkRNAP subunits d+l<br />
| + | |
- | **[[3nff]], [[3nfg]], [[3nfh]], [[3nfi]] – RNAP I fragments (mutant) – ''Candida glabrata''<br />
| + | |
- | | + | |
- | *'''Prokaryotic DNA-dependent RNAP complex with DNA/RNA'''
| + | |
- | | + | |
- | **[[4v8s]] – SsRNAP + DNA<br />
| + | |
- | **[[3q22]], [[3q23]], [[3q24]], [[4ff1]], [[4ff2]], [[4ff3]], [[4ff4]] – RNAP + DNA – Enterobacteria phage N4<br />
| + | |
- | **[[2o5i]], [[2o5j]], [[4gzy]], [[4gzz]], [[4xln]], [[4xlr]] - TtRNAP subunits α,β,β’,ω + DNA +RNA<br />
| + | |
- | **[[5x22]] - TtRNAP subunits α,β,β’,ω + DNA + RNA + CMPCPP<br />
| + | |
- | **[[5x21]] - TtRNAP subunits α,β,β’,ω + DNA + RNA + antibiotic<br />
| + | |
- | **[[4wqs]], [[4xlp]], [[4xlq]], [[4xls]], [[5tjg]] - TtRNAP subunits α,β,β’,ω + DNA<br />
| + | |
- | **[[2ppb]] - TtRNAP subunits α,β,β’,ω + antibiotic + DNA + RNA + substrate analog<br />
| + | |
- | **[[4yg2]], [[4jk1]], [[4jk2]], [[4jkr]], [[4kmu]] - EcRNAP subunits α,β,β’,ω + RNA<br />
| + | |
- | **[[6flp]], [[6bjs]], [[6asx]], [[6alh]], [[6alf]] - EcRNAP subunits α,β,β’,ω + RNA + DNA – Cryo EM<br />
| + | |
- | **[[4kn4]], [[4kn7]] - EcRNAP subunits α,β,β’,ω + RNA + antibiotic<br />
| + | |
- | | + | |
- | *'''Prokaryotic DNA-dependent RNAP complex with protein'''
| + | |
- | | + | |
- | **[[3p8b]] – PfRNAP subunit ε’’ + transcription antitermination protein <br />
| + | |
- | **[[3qqc]] - PfRNAP subunits β, ε’’ + transcription antitermination protein<br />
| + | |
- | **[[2be5]]- TtRNAP subunits α,β,β’,ω + σ factor + inhibitor <br />
| + | |
- | **[[2cw0]], [[5tmf]] - TtRNAP subunits α,β,β’,ω + σ factor<br />
| + | |
- | **[[3wod]] - TtRNAP subunits α,β,β’,ω + σ factor + GP39<br />
| + | |
- | **[[4mq9]] - TtRNAP subunits α,β,β’,ω + σ factor + GE23077<br />
| + | |
- | **[[5tmc]] - TtRNAP subunits α,β,β’,ω + σ factor + protein<br />
| + | |
- | **[[3dxj]], [[3eql]] - TtRNAP subunits α,β,β’,ω + σ factor + antibiotic<br />
| + | |
- | **[[5xj0]] - TtRNAP subunits α,β,β’,ω + σ factor + GP39 + GP76<br />
| + | |
- | **[[4wqt]] - TtRNAP subunits α,β,β’,ω + RNA cleavage stimulating factor<br />
| + | |
- | **[[3mlq]] - TtRNAP subunit β + transcription-repair coupling factor<br />
| + | |
- | **[[3woe]], [[3wof]] - TtRNAP subunit β + GP39<br />
| + | |
- | **[[2lmc]] - EcRNAP subunit β + RNAP inhibitor <br />
| + | |
- | **[[3mmp]] - EcRNAP subunit β + EF-TU<br />
| + | |
- | **[[4ljz]], [[4lk1]], [[4mey]], [[4xsx]], [[4xsy]], [[4xsz]], [[4zh2]], [[4zh3]] , [[4zh4]], [[5byh]], [[5nwt]], [[5uag]], [[5uah]], [[5uaj]], [[5ual]], [[5uaq]], [[5ui8]] - EcRNAP subunits α,β,β’,ω + σ factor <br />
| + | |
- | **[[6c9y]] - EcRNAP subunits α,β,β’,ω + σ factor – Cryo EM<br />
| + | |
- | **[[4mex]] - EcRNAP subunits α,β,β’,ω + σ factor + salinamide<br />
| + | |
- | **[[4lk0]], [[4llg]], [[4mex]], [[4yfk]], [[4yfn]], [[4yfx]] - EcRNAP subunits α,β,β’,ω + σ factor + RNAP inhibitor<br />
| + | |
- | **[[5uac]], [[6cux]] - EcRNAP subunits α,β,β’,ω + σ factor + antibiotic<br />
| + | |
- | **[[6byu]] - EcRNAP subunits α,β,β’,ω + σ factor + PPAPP<br />
| + | |
- | **[[5w1s]] - EcRNAP subunits α,β,β’,ω + σ factor + TRAR<br />
| + | |
- | **[[5tbz]] - EcRNAP subunits α,β,β’ + NusG – Cryo EM<br />
| + | |
- | **[[6fbv]] - MtuRNAP subunits α,β,β’,ω + σ factor – single particle EM<br />
| + | |
- | **[[3ihq]], [[1z3e]], [[3gfk]] - BsRNAP subunit α + regulatory protein SPX<br />
| + | |
- | **[[1l9u]] - TaRNAP subunits α,β,β’,ω + σ factor<br />
| + | |
- | **[[2jzb]] – RNAP subunit α + NusA transcription elongation factor – ''Yersinia pseudotuberculosis''<br />
| + | |
- | **[[3tbi]] - RNAP subunit β + GP33 – Enterobacteria phage T4<br />
| + | |
- | **[[3lpe ]]- MjRNAP subunit ε’’ + transcription antitermination protein<br />
| + | |
- | | + | |
- | | + | |
- | *'''Prokaryotic DNA-dependent RNAP complex with protein + DNA/RNA'''
| + | |
- | | + | |
- | **[[3aoh]], [[3aoi]] - TtRNAP subunits α,β,β’,ω + DNA + RNA + GFH1<br />
| + | |
- | **[[4oin]], [[4oio]] - TtRNAP subunits α,β,β’,ω + σ factor + GE23077 + DNA<br />
| + | |
- | **[[4oip]] - TtRNAP subunits α,β,β’,ω + σ factor + GE23077 + DNA + nucleotide<br />
| + | |
- | **[[4oiq]], [[4oir]] - TtRNAP subunits α,β,β’,ω + σ factor + GE23077 + DNA + antibiotic<br />
| + | |
- | **[[4g7h]], [[4g7o]], [[4g7z]], [[4q4z]], [[5d4d]], [[5d4e]], [[5voi]] - TtRNAP subunits α,β,β’,ω + σ factor + DNA<br />
| + | |
- | **[[4q5s]], [[5d4c]], [[5e17]], [[5e18]], [[5vo8]] - TtRNAP subunits α,β,β’,ω + σ factor + DNA + RNA<br />
| + | |
- | **[[5i2d]] - TtRNAP subunits α,β,β’,ω + σ factor + transcriptional regulator + DNA + RNA<br />
| + | |
- | **[[6cuu]] - TtRNAP subunits α,β,β’,ω + σ factor + DNA + antibiotic<br />
| + | |
- | **[[3t72]] - EcRNAP subunit β + Pho box DNA + PhoB<br />
| + | |
- | **[[1lb2]], [[3n4m]] - EcRNAP subunit α + DNA + CAP<br />
| + | |
- | **[[1xs9]] - EcRNAP subunit α + DNA + MARA<br />
| + | |
- | **[[5ciz]] - EcRNAP subunit α + DNA + CRP<br />
| + | |
- | **[[3n97]] - EcRNAP subunit α C terminal + DNA + σ factor<br />
| + | |
- | **[[5nsr]], [[5nss]], [[6gh6]], [[6gh5]], [[6ca0]] - EcRNAP subunits α,β,β’,ω + σ factor + DNA – Cryo EM<br />
| + | |
- | **[[5vt0]] - EcRNAP subunits α,β,β’,ω + σ factor + RNA – Cryo EM<br />
| + | |
- | **[[4yln]], [[4ylo]], [[4ylp]], [[5ipl]], [[5ipm]], [[5ipn]], [[6gfw]] - EcRNAP subunits α,β,β’,ω + σ factor + DNA + RNA<br />
| + | |
- | **[[6b6h]] - EcRNAP subunits α,β,β’,ω + σ factor + CAP + DNA + RNA – Cryo EM<br />
| + | |
- | **[[3iyd]] - EcRNAP subunits α,β,β’,ω + σ factor + catabolite gene activator + DNA<br />
| + | |
- | **[[4s20]] - EcRNAP subunits α,β,β’,ω + σ factor + RAPA + DNA<br />
| + | |
- | **[[6c6u]] - EcRNAP subunits α,β,β’,ω + NusG + DNA – Cryo EM<br />
| + | |
- | **[[6c6t]], [[6c6s]] - EcRNAP subunits α,β,β’,ω + RFAH + DNA – Cryo EM<br />
| + | |
- | **[[5ms0]] - EcRNAP subunits α,β,β’,ω + σ factor + NusB + NusG + NusA + antitermination protein + RS10 + DNA – Cryo EM<br />
| + | |
- | **[[6flq]] - EcRNAP subunits α,β,β’,ω + NusA + DNA + RNA – Cryo EM<br />
| + | |
- | **[[6alg]] - EcRNAP subunits α,β,β’,ω + NUN + DNA + RNA – Cryo EM<br />
| + | |
- | **[[5uha]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA <br />
| + | |
- | **[[5uh9]], [[5uh8]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + RNA <br />
| + | |
- | **[[5uhg]], [[5uhc]], [[5uh6]], [[5uh5]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + RNA + antibiotic<br />
| + | |
- | **[[5uhd]], [[5uhb]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + antibiotic<br />
| + | |
- | **[[5uhf]], [[5uhe]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + RNA + inhibitor<br />
| + | |
- | **[[1l9z]] - TaRNAP subunits α,β,β’,ω + σ factor + DNA<br />
| + | |
- | | + | |
- | *'''Prokaryotic DNA-dependent RNAP complex with small molecule'''
| + | |
- | | + | |
- | **[[1zyr]], [[2a68]], [[2a69]], [[2a6e]], [[2a6h]] - TtRNAP subunits α,β,β’,ω + antibiotic<br />
| + | |
- | **[[1i6v]], [[1ynj]], [[1ynn]] - TaRNAP subunits α,β,β’,ω + antibiotic<br />
| + | |
- | | + | |
- | *'''Eukaryotic DNA-dependent RNAP I'''
| + | |
- | | + | |
- | **[[1a1d]] – yRNAP subunit RPB8 – yeast - NMR<br />
| + | |
- | **[[2rf4]] - yRNAP I subunit RPA4<br />
| + | |
- | **[[5g5l]], [[5lmx]], [[5m3f]], [[5m3m]], [[5m5w]], [[5m5x]], [[5m5y]], [[5m64]] – yRNAP I – Cryo EM<br />
| + | |
- | **[[5n5y]], [[5n5z]], [[5n60]], [[5oa1]] – yRNAP I + RRN – Cryo EM<br />
| + | |
- | **[[5n61]], [[6h68]], [[6h67]] – yRNAP I + RRN + DNA + RNA – Cryo EM<br />
| + | |
- | **[[5w66]], [[5w65]], [[5w64]], [[5w5y]] – yRNAP I + transcription initiation factor + DNA + RNA – Cryo EM<br />
| + | |
- | | + | |
- | *'''Eukaryotic DNA-dependent RNAP II'''
| + | |
- | | + | |
- | **[[1qkl]] - hRNAP II subunit RPB6 - human<br />
| + | |
- | **[[2c35]] - hRNAP II subunits RPB4 RPB7 (mutant) – NMR<br />
| + | |
- | **[[2f3i]] - hRNAP II subunits RPB8 RPB17 RPABC3 – NMR<br />
| + | |
- | **[[2ghq]], [[2ght]] - hRNAP II subunits RPB1 + hRNAP II C terminal<br />
| + | |
- | **[[2q5e]], [[3l0b]], [[3l0c]] - hRNAP II C terminal<br />
| + | |
- | **[[1nik]], [[1nt9]], [[1wcm]], [[2b8k]], [[3fki]], [[3qt1]], [[1i3q]], [[1i50]], [[1dzf]], [[5ip7]], [[5ip9]], [[5u5q]] – yRNAP II<br />
| + | |
- | **[[4x67]], [[4x6a]], [[4y52]], [[4y7n]], [[5c3e]], [[5c44]], [[5c4a]], [[5c4j]], [[5c4x]], [[6bqf]], [[6bm4]], [[6bm2]], [[6blp]], [[6blo]], [[5w51]], [[5w4u]] – yRNAP II + DNA + RNA<br />
| + | |
- | **[[6a5v]], [[6a5u]], [[6a5t]], [[6a5r]], [[6a5p]], [[6a5o]], [[6a6l]] – yRNAP II + DNA + RNA + histones – Cryo EM<br />
| + | |
- | **[[3j1n]], [[4v1n]], [[5fmf]], [[5x51]], [[5x50]], [[5x4z]] – yRNAP II – Cryo EM<br />
| + | |
- | **[[1y14]] - yRNAP II subunits RPB4 RPB7<br />
| + | |
- | **[[5flm]] – bRNAP II + DNA + RNA - bovine<br />
| + | |
- | **[[5oik]] – bRNAP II + SPT4 + SPT5 + DNA + RNA <br />
| + | |
- | **[[3ef0]], [[3ef1]] - fyRNAP II subunit α C terminal – fission yeast<br />
| + | |
- | **[[3h0g]] – fyRNAP II<br />
| + | |
- | **[[5u0s]] – fyRNAP II + mediator complex – Cryo EM<br />
| + | |
- | | + | |
- | *'''Eukaryotic DNA-dependent RNAP II complex with DNA/RNA'''
| + | |
- | | + | |
- | **[[4boc]] – hRNAP + DNA<br />
| + | |
- | **[[1i6h]], [[4a3i]] - yRNAP II + DNA<br />
| + | |
- | **[[4v1m]] - yRNAP II + DNA – Cryo EM<br />
| + | |
- | **[[1r9s]], [[2ja5]], [[2ja6]], [[2ja7]], [[2ja8]], [[2nvq]], [[2nvt]], [[2nvx]], [[2nvy]], [[2nvz]], [[3gtg]], [[3gtj]], [[3gtk]], [[3gtl]], [[3gtm]], [[3gto]], [[3gtp]], [[3gtq]], [[3hov]], [[3how]], [[3hox]], [[3hoy]], [[3hoz]], [[3po2]], [[3po3]], [[3m3y]], [[3m4o]], [[4a3g]], [[4a93]], [[4a3b]], [[4a3c]], [[4a3d]], [[4a3e]], [[4a3f]], [[4a3j]], [[4a3k]], [[4a3l]], [[4a3m]] - yRNAP II + RNA + DNA<br />
| + | |
- | **[[5vvs]] - yRNAP II + RNA + DNA – Cryo EM<br />
| + | |
- | **[[1y1w]], [[1y77]], [[2r7z]], [[2r92]], [[2r93]], [[3h3v]], [[3rzd]], [[3rzo]], [[3s15]], [[3s16]], [[3s17]], [[3s1m]], [[3s1n]], [[3s1q]], [[3s1r]], [[3s2d]], [[3s2h]] - yRNAP II + RNA
| + | |
- | **[[2b63]] - yRNAP II + nucleotide + RNA<br />
| + | |
- | **[[2e2i]], [[2e2j]] - yRNAP II + nucleotide + DNA<br />
| + | |
- | **[[2yu9]], [[3i4m]], [[3i4n]] - yRNAP II + nucleotide + DNA + RNA<br />
| + | |
- | **[[2vum]] - yRNAP II + inhibitor + DNA + RNA<br />
| + | |
- | | + | |
- | *'''Eukaryotic DNA-dependent RNAP II complex with protein'''
| + | |
- | | + | |
- | **[[3o2q]], [[3o2s]] – hRNAP II subunit α C-terminal + symplekin <br />
| + | |
- | **[[3j0k]], [[5iy6]], [[5iy7]], [[5iy8]], [[5iy9]], [[5iya]], [[5iyb]], [[5iyc]], [[5iyd]] – hRNAP II + TFIIF – Cryo EM <br />
| + | |
- | **[[2lto]] - hRNAP II subunit RPB1 + Tudor domain containing protein 3<br />
| + | |
- | **[[1pqv]], [[1y1v]], [[4bbr]], [[4bbs]] - yRNAP II + TFIIS<br />
| + | |
- | **[[1y1y]] - yRNAP II + TFIIS + DNA +RNA <br />
| + | |
- | **[[1r5u]], [[3k7a]], [[3k1f]] - yRNAP II + TFIIB <br />
| + | |
- | **[[4v1o]], [[5fyw]], [[5fz5]], [[5sva]] - yRNAP II + DNA + TIIF + TBP + mediator – Cryo EM<br />
| + | |
- | **[[2l0i]] – yRNAP C-terminal + RTT103 – NMR<br />
| + | |
- | **[[4bxx]], [[4bxz]], [[4by1]], [[4by7]] – yRNAP II + RNA + DNA + transcription factor Bye1<br />
| + | |
- | **[[5vvr]] - yRNAP II + DNA + RNA + Rad26 – Cryo EM<br />
| + | |
- | **[[6gml]] – pRNAP II + RNA + DNA + DSIF + NELF – pig – Cryo EM<br />
| + | |
- | **[[6gmh]] – pRNAP II + RNA + DNA + DSIF + PAF + SPT6 – Cryo EM<br />
| + | |
- | **[[6exv]] – pRNAP II + RNA + DNA + amatoxin – Cryo EM<br />
| + | |
- | | + | |
- | *'''Eukaryotic DNA-dependent RNAP II complex with small molecule'''
| + | |
- | | + | |
- | **[[3pgl]] - hRNAP II C terminal + inhibitor<br />
| + | |
- | **[[3cqz]], [[1k83]] - yRNAP II + inhibitor<br />
| + | |
- | **[[1twa]], [[1twc]], [[1twf]], [[1twg]], [[1twh]] - yRNAP II + nucleotide<br />
| + | |
- | | + | |
- | *'''Eukaryotic DNA-dependent RNAP III'''
| + | |
- | | + | |
- | **[[2xub]], [[2xv4]] - hRNAP III subunits RPC3<br />
| + | |
- | **[[5afq]] - hRNAP III subunits RPC3 + RPC32B<br />
| + | |
- | **[[2dk8]] – RNAP III RPC34 domain - mouse – NMR<br />
| + | |
- | **[[2dk5]] – hRNAP III winged helix domain (mutant) – NMR<br />
| + | |
- | **[[2yu3]] - hRNAP III winged helix domain<br />
| + | |
- | **[[2ckz]], [[5fj9]], [[5fja]], [[6eu3]], [[6eu2]] - yRNAP III - Cryo EM<br />
| + | |
- | **[[5fj8]], [[6f41]] - yRNAP III + DNA + RNA - Cryo EM<br />
| + | |
- | **[[6f44]], [[6f42]], [[6f40]], [[6eu1]] - yRNAP III + DNA – Cryo EM<br />
| + | |
- | **[[6cnf]], [[6cnd]], [[6cnc]], [[6cnb]] - yRNAP III + DNA + TFIIIB – Cryo EM<br />
| + | |
- | **[[5xon]] - yRNAP III + DNA + RNA + TFIIB + SPT4 + SPT5 – Cryo EM<br />
| + | |
- | **[[5xog]] - yRNAP III + DNA + RNA + SPT5 + KOW5 + ELF1 – Cryo EM<br />
| + | |
- | **[[6eu0]] - yRNAP III + DNA + TFIIIB + TATA-box-binding protein – Cryo EM<br />
| + | |
- | **[[3ayh]] - fyRNAP III subunit Rpc8+Rpc9<br />
| + | |
- | | + | |
- | *'''Eukaryotic DNA-dependent RNAP μ'''
| + | |
- | | + | |
- | **[[4lzd]] – hRNAP μ<br />
| + | |
- | **[[4lzg]], [[4m04]], [[4m0a]], [[5twp]], [[5twq]], [[5twr]], [[5tws]]. [[5txx]], [[5txz]], [[5tyb]], [[5tyc]], [[5tyd]], [[5tye]], [[5tyf]], [[5tyg]], [[5tyu]], [[5tyv]], [[5tyw]], [[5tyx]], [[5tyy]], [[5tyz]] – hRNAP μ + DNA<br />
| + | |
- | **[[5vzi]], [[5vzh]], [[5vzg]], [[5vzf]], [[5vze]], [[5vzd]], [[5vzc]], [[5vzb]], [[5vza]], [[5vz9]], [[5vz8]], [[5vz7]] – hRNAP μ (mutant) + DNA + nucleotide<br />
| + | |
- | | + | |
- | *'''Eukaryotic DNA-dependent RNAP mitochondrial'''
| + | |
- | | + | |
- | **[[4boc]] – hRNAP + DNA<br />
| + | |
- | **[[6erq]], [[6erp]] – hRNAP + DNA + MTTFA + dimethyladenosine transferase<br />
| + | |
- | **[[3spa]] - hRNAP + polypeptide <br />
| + | |
- | | + | |
- | *'''Eukaryotic DNA primase'''
| + | |
- | | + | |
- | **[[4lik]], [[4mhk]] - hDNAP small subunit<br />
| + | |
- | **[[3q36]] – hDNAP large subunit<br />
| + | |
- | **[[5i7m]] – hDNAP large subunit (mutant)<br />
| + | |
- | **[[3l9q]] – hDNAP large subunit P58C domain <br />
| + | |
- | **[[5dqo]] – hDNAP large subunit P58C domain (mutant)<br />
| + | |
- | **[[4rr2]] - hDNAP small + large subunit<br />
| + | |
- | **[[4bpu]] - hDNAP small (mutant) + large subunit<br />
| + | |
- | **[[4ehs]] – HpDNAP C terminal<br />
| + | |
- | **[[4lim]], [[4mm2]] - yDNAP small subunit<br />
| + | |
- | **[[3lgb]] - yDNAP large subunit<br />
| + | |
- | | + | |
- | *'''Eukaryotic DNA primase complex'''
| + | |
- | | + | |
- | **[[4lil]] - hDNAP small subunit + UTP<br />
| + | |
- | **[[5f0s]], [[5f0q]] – hDNAP large subunit C terminal + RNA<br />
| + | |
- | **[[4bpw]] - hDNAP small (mutant) + large subunit + UTP<br />
| + | |
- | **[[4bpx]] - hDNAP small (mutant) + DNA polymerase α catalytic subunit<br />
| + | |
- | **[[5exr]] - hDNAP small + large subunits + DNA polymerase α catalytic subunit<br />
| + | |
- | | + | |
- | *'''Bacterial DNA primase'''
| + | |
- | | + | |
- | **[[1d0q]] - GsDNAP zinc-binding domain - ''Geobacillus stearothermophilus''<br />
| + | |
- | **[[1z8s]] - GsdnaG dnaB binding domain - NMR<br />
| + | |
- | **[[2haj]] - EcdnaG catalytic domain - NMR<br />
| + | |
- | **[[1t3w]] – EcdnaG C-terminal<br />
| + | |
- | **[[1eqn]], [[1dd9]], [[1dde]] – EcdnaG catalytic core<br />
| + | |
- | **[[5w33]] - MtudnaG <br />
| + | |
- | **[[5vaz]] – dnaG – ''Pseudomonas aeruginosa'' <br />
| + | |
- | **[[4im9]] – VcdnaG C-terminal<br />
| + | |
- | **[[3m1m]] – DNAP RNA polymerase domain – ''Sulfolobus islandicus''<br />
| + | |
- | **[[1zt2]], [[2pa8]], [[2pmz]], [[3hkz]] - DNAP small + large subunit – ''Sulfolobus solfataricus''<br />
| + | |
- | **[[2au3]] – DNAP zinc-binding and RNA polymerase domains – ''Aquifex aeolicus''<br />
| + | |
- | **[[1v33]] - PhDNAP small subunit – ''Pyrocuccus horikoshii''<br />
| + | |
- | **[[1g71]] - PfDNAP small subunit<br />
| + | |
- | **[[4e2k]] – SaDNAP – ''Staphylococcus aureus''<br />
| + | |
- | **[[2lzn]] – SaDNAP C-terminal – NMR<br />
| + | |
- | **[[5guj]] – BsdnaG RNAP domain <br />
| + | |
- | | + | |
- | *'''Bacterial DNA primase complex'''
| + | |
- | | + | |
- | **[[2r6a]], [[2r6c]] - GsdnaG helicase binding domain + helicase <br />
| + | |
- | **[[4m4w]] - GsdnaG helicase binding domain + helicase + DnaI<br />
| + | |
- | **[[3b39]] – EcdnaG catalytic domain + DNA<br />
| + | |
- | **[[5w36]], [[5w35]], [[5w34]] - MtudnaG + DNA<br />
| + | |
- | **[[1v34]] - PhDNAP small subunit + UTP<br />
| + | |
- | **[[4edg]], [[4edk]], [[4edr]], [[4edt]], [[4edv]], [[4ee1]] – SaDNAP + nucleotide<br />
| + | |
- | | + | |
- | *'''RNA polymerase from Bacteriophage T7'''
| + | |
- | | + | |
- | **[[1q57]] – T7DNAP/helicase (mutant) – Enterobacteria phage T7<br />
| + | |
- | **[[1nui]] – T7DNAP/helicase primase fragment (mutant)<br />
| + | |
- | **[[1cr0]] - T7DNAP/helicase helicase domain<br />
| + | |
- | **[[1cr1]], [[1cr2]], [[1cr4]] - T7DNAP/helicase helicase domain + nucleotide<br />
| + | |
- | **[[4rnp]] – T7RNAP<br />
| + | |
- | **[[1aro]] – T7RNAP + T7 lysozyme<br />
| + | |
- | **[[1cez]], [[1h38]], [[1qln]], [[2pi4]], [[2pi5]] - T7RNAP + DNA<br />
| + | |
- | **[[1msw]], [[1s0v]], [[1s76]], [[1s77]], [[3e2e]], [[3e3j]] - T7RNAP + DNA + RNA<br />
| + | |
- | | + | |
- | *'''RNA-dependent RNAP'''
| + | |
- | | + | |
- | **[[3phu]], [[1khv]], [[1khw]] – HfRNAP L RNA-directed – Hemorrhagic fever virus<br />
| + | |
- | **[[5v5i]], [[5v5h]], [[5v5g]] – HfRNAP L + ubiquitin<br />
| + | |
- | **[[2xwh]], [[2xxd]], [[2xhu]],[[ 2xhw]], [[3i5k]], [[1c2p]], [[1csj]], [[1quv]], [[1yuy]], [[1yv2]], [[1yvx]], [[1yvz]], [[3gsz]], [[4aep]], [[4aex]], [[2wrm]], [[3mwv]], [[3mww]] – HvRNAP Ns5b domain – Hepatitis virus<br />
| + | |
- | **[[3vc8]] - HvRNAP cytoplasmic domain C terminal<br />
| + | |
- | **[[3vcb]], [[4ry4]], [[4ry5]], [[4ry6]], [[4ry7]] - HvRNAP cytoplasmic domain C terminal (mutant) <br />
| + | |
- | **[[2xym]], [[2xhv]], [[2xi2]], [[4e76]], [[4adp]], [[4obc]], [[4wt9]] - HvRNAP Ns5b domain (mutant) <br />
| + | |
- | **[[1rdr]] - PoRNAP – Polio virus<br />
| + | |
- | **[[1tql]], [[2ijd]], [[2ijf]], [[4nlo]], [[4nlp]], [[4nlq]], [[4nlr]], [[4nls]], [[4nlt]], [[4nlu]], [[4nlv]], [[4nlw]], [[4nlx]], [[4nly]], [[4r0e]] - PoRNAP (mutant) <br />
| + | |
- | **[[2xi5]], [[2xi7]] – BvRNAP L N-terminal – Bunyavirus<br />
| + | |
- | **[[3jsb]] – RNAP (mutant) – Lymphocytic choriomengitis virus<br />
| + | |
- | **[[2wk4]], [[2uut]], [[2uuw]] – SvRNAP (mutant) – Sapporo virus<br />
| + | |
- | **[[2ckw]] - SvRNAP residues 1135-1649 <br />
| + | |
- | **[[3nky]], [[4wyl]], [[4wyw]], [[6gvv]] - FmRNAP (mutant) - Foot-and-mouth virus<br />
| + | |
- | **[[1hhs]], [[4a8o]], [[4b02]], [[1hi8]], [[5fj6]] – P6RNAP – Bacteriophage φ-6<br />
| + | |
- | **[[2jl9]], [[2jlf]], [[1wac]] – P6RNAP (mutant) <br />
| + | |
- | **[[5fj7]] – P6RNAP + major inner protein P1 <br />
| + | |
- | **[[2po4]] – N4RNAP polymerase domain – Bacteriophage N4<br />
| + | |
- | **[[1l9k]] – DevRNAP N terminal – Dengue virus<br />
| + | |
- | **[[2j7u]], [[4c11]] - DevRNAP polymerase domain<br />
| + | |
- | **[[5ccv]] - DevRNAP NS5<br />
| + | |
- | **[[1oks]] – RNAP α subunit – Measles virus<br />
| + | |
- | **[[1r4g]] - RNAP α subunit – Sendai virus – NMR<br />
| + | |
- | **[[1s48]], [[1s49]], [[1s4f]] – DvRNAP residues 71-679 – Diarrhea virus<br />
| + | |
- | **[[2cjq]] - DvRNAP polymerase domain<br />
| + | |
- | **[[1sh0]], [[1sh2]], [[1sh3]] - NvRNAP C terminal – Norwalk virus<br />
| + | |
- | **[[1vyi]] - RNAP α subunit C terminal – Rabies virus<br />
| + | |
- | **[[2hcn]], [[2hcs]], [[2hfz]] – RNAP polymerase domain – West Nile virus<br />
| + | |
- | **[[2pgg]], [[2pus]] – RNAP – Bursal disease virus<br />
| + | |
- | **[[2r7o]], [[2r7q]] – SrRNAP – Simian rotavirus<br />
| + | |
- | **[[4au6]] - RNAP – bovine rotavirus – Cryo-EM<br />
| + | |
- | **[[2yi8]], [[2yi9]], [[2yia]], [[2yib]] – IpnvRNAP – Infectious pancreatic necrosis virus<br />
| + | |
- | **[[3n6l]] – EvRNAP – Human enterovirus<br />
| + | |
- | **[[4uci]], [[4ucj]], [[4ucl]], [[4ucy]], [[4ucz]] – HmpvRNAP residues 1600-2005 – Human metapneumovirus<br />
| + | |
- | **[[4uck]], [[4ud0]] – HmpvRNAP residues 1600-2005 (mutant)<br />
| + | |
- | **[[4zp8]], [[4zp9]], [[4zpa]], [[4zpb]], [[4zpc]], [[4zpd]] – CvRNAP residues 1724-2185 (mutant) – Coxsackievirus<br />
| + | |
- | **[[3ddk]] – CvRNAP residues 1724-2185 <br />
| + | |
- | **[[3nah]], [[3nai]], [[3qid]], [[3uqs]] – MnvRNAP – Murine norovirus<br />
| + | |
- | **[[4wfx]], [[4wfy]], [[4wfz]] – CvRNAP RDRP domain (mutant)<br />
| + | |
- | **[[2j7n]], [[2j7o]] – RNAP residues 381-1402 – Neurospora crassa<br />
| + | |
- | **[[4gzk]], [[4ieg]] – RNAP – cystovirus 12<br />
| + | |
- | **[[4i1t]] – RNAP L – Pichinde virus <br />
| + | |
- | **[[5chs]] – RNAP L N-terminal – Vescicular stomatitis Indiana virus <br />
| + | |
- | **[[4xha]], [[4xhi]] – TavRNAP – Thosea asigna virus <br />
| + | |
- | **[[4miw]], [[5izh]], [[5j1n]], [[5j1p]] – RNAP L N terminal – Lassa virus <br />
| + | |
- | **[[4mtp]] – RNAP RDRP module – Encephalitis virus <br />
| + | |
- | **[[4cgx]], [[4chc]] – TvRNAP N terminal – Thogoto virus <br />
| + | |
- | **[[4chd]] – TvRNAP 627 domain <br />
| + | |
- | **[[4che]], [[4chf]] – TvRNAP cap-binding domain <br />
| + | |
- | **[[5fsw]] - NvRNAP C terminal – Thielavia terrestris<br />
| + | |
- | **[[5hsb]] – RNAP – Andes virus<br />
| + | |
- | **[[5ize]] – RNAP L – Hantaan virus<br />
| + | |
- | **[[5ltf]] – LcmvRNAP L – Lymphocytic choriomeningitis mammarenavirus<br />
| + | |
- | **[[5lts]] - LcmvRNAP (mutant)<br />
| + | |
- | **[[5u0c]] - ZvRNAP NS5 – Zika virus<br />
| + | |
- | | + | |
- | *'''RNA-dependent RNAP complex with RNA/DNA'''
| + | |
- | | + | |
- | **[[4e78]], [[4e7a]], [[4wta]], [[4wtc]], [[4wtd]], [[4wte]], [[4wtf]], [[4wtg]], [[4wti]], [[4wtj]], [[4wtk]], [[4wtl]], [[4wtm]] - HvRNAP Ns5b domain (mutant) + RNA<br />
| + | |
- | **[[3ol6]], [[2jlg]], [[4k4s]], [[4k4t]], [[4k4u]], [[4k4v]], [[4k4w]] – PoRNAP (mutant) + RNA <br />
| + | |
- | **[[3ol7]], [[3ol8]], [[3ol9]], [[3ola]], [[3olb]] - PoRNAP (mutant) + RNA + CTP derivative<br />
| + | |
- | **[[3klv]], [[3kmq]], [[3kms]], [[3kna]], [[3nl0]], [[3nma]], [[4iqx]], [[4wzm]], [[4wzq]], [[4x2b]], [[5jxs]] – FmRNAP (mutant) + RNA<br />
| + | |
- | **[[3koa]] - FmRNAP (mutant) + RNA + GTP<br />
| + | |
- | **[[1wne]] – FmRNAP + RNA <br />
| + | |
- | **[[2e9r]], [[2e9t]], [[2e9z]], [[2ec0]] - FmRNAP + RNA + inhibitor<br />
| + | |
- | **[[1uvi]], [[1uvl]], [[1uvm]], [[1uvn]], [[4a8f]], [[4a8k]], [[4a8m]], [[4a8q]], [[4a8s]], [[4a8w]], [[4a8y]] – P6RNAP + RNA<br />
| + | |
- | **[[3bsn]], [[3bso]], [[3h5x]], [[3h5y]] - NvRNAP + RNA + nucleotide<br />
| + | |
- | **[[2r7r]], [[2r7s]], [[2r7t]], [[2r7u]], [[2r7v]], [[2r7w]], [[2r7x]] – SrRNAP + RNA<br />
| + | |
- | **[[5amq]], [[5amr]] – BvRNAP + RNA<br />
| + | |
- | **[[4k50]] – RNAP + RNA – Human rhinovirus<br />
| + | |
- | **[[3c2p]], [[3c3l]], [[3c46]], [[3q0a]] - N4RNAP polymerase domain + promoter DNA<br />
| + | |
- | **[[1hht]], [[1hi0]] – P6RNAP + DNA<br />
| + | |
- | **[[1uvj]], [[1uvk]] – P6RNAP + RNA<br />
| + | |
- | **[[4k4x]], [[4k4y]], [[4k4z]] – CvRNAP + RNA<br />
| + | |
- | | + | |
- | *'''RNA-dependent RNAP complex with protein'''
| + | |
- | | + | |
- | **[[3phw]], [[2pt2]], [[3pt2]] – HfRNAP + ubiquitin<br />
| + | |
- | **[[3phx]], [[3pse]] – HfRNAP + ISG15<br />
| + | |
- | **[[2d7s]], [[2f8e]] – FmRNAP + VPG <br />
| + | |
- | **[[5y3d]] – MnvRNAP + VPG <br />
| + | |
- | **[[3cdw]] - CvRNAP + POP + VPG<br />
| + | |
- | **[[4f5x]] – SrRNAP + Vp2 + Vp6<br />
| + | |
- | **[[5h0r]] – RNAP + Vp4 + RNA - BMCPV<br />
| + | |
- | **[[3zed]] – IpnvRNAP + capsid protein Vp3<br />
| + | |
- | **[[4hxd]] – RNAP L + polyubiquitin-C – Dugbe virus<br />
| + | |
- | **[[4r71]] – RNAP b chain + EF-TS EF-TU + RPS1 – Enterobacteria phage qbeta<br />
| + | |
- | **[[5jze]] – RNAP + ISG15 – Erve virus<br />
| + | |
- | | + | |
- | *'''RNA-dependent RNAP complex with small molecule'''
| + | |
- | | + | |
- | **[[2xwy]], [[3mf5]], [[3hkw]], [[3hky]], [[3lkh]], [[3gnv]], [[3gnw]], [[3h98]], [[3g86]], [[3h59]], [[1nhu]], [[1nhv]], [[2brk]], [[2brl]], [[2gc8]], [[2giq]], [[2gir]], [[2hai]], [[2hwh]], [[2hwi]], [[2i1r]], [[2ijn]], [[2jc0]], [[2jc1]], [[2qe2]], [[2qe5]], [[2wcx]], [[2who]], [[3ciz]], [[3cj0]], [[3cj2]], [[3cj3]], [[3cj4]], [[3cj5]], [[3cso]], [[3cvk]], [[3fqk]], [[3fql]], [[3gol]], [[3h5s]], [[3h5u]], [[3q0z]], [[3qgd]], [[3qge]], [[3qgf]], [[3qgg]], [[3qgh]], [[3qgi]], [[3ska]], [[3ske]], [[3skh]], [[3uph]], [[3upi]], [[4dru]], [[3vqs]], [[3udl]], [[4eo6]], [[4eo8]], [[4eaw]], [[4gmc]], [[4ih5]], [[4ih6]], [[4ih7]], [[4iz0]], [[4jtz]], [[4jtw]], [[4jty]], [[4ju1]], [[4ju2]], [[4jjs]], [[4jju]], [[4j02]], [[4j04]], [[4j06]], [[4j08]], [[2yoj]], [[3tuq]], [[3tuv]], [[3u4o]], [[3u4r]], [[4mk7]], [[4mk8]], [[4mk9]], [[4mka]], [[4mkb]], [[4mz4]], [[4nld]], [[3tyq]], [[3tyv]], [[4mia]], [[4mib]], [[4oow]], [[4tlr]], [[5pzk]], [[5pzl]], [[5pzm]], [[5pzn]], [[5pzo]], [[5pzp]], [[5trh]], [[5tri]], [[5trj]] - HvRNAP Ns5b domain + inhibitor<br />
| + | |
- | **[[3gyn]], [[1os5]], [[3br9]], [[3bsa]], [[3bsc]], [[3cde]], [[3co9]], [[3cwj]], [[3d28]], [[3d5m]], [[3e51]], [[3frz]], [[3igv]], [[3hvo]], [[3h2l]], [[4kai]], [[4kb7]], [[4kbi]], [[4ke5]], [[4khm]], [[4khr]], [[5twm]], [[5twn]] - HvRNAP Ns5b domain (mutant) + inhibitor<br />
| + | |
- | **[[2xi3]] - HvRNAP Ns5b domain (mutant) + GTP<br />
| + | |
- | **[[1gx5]], [[1gx6]] - HvRNAP Ns5b domain + nucleotide<br />
| + | |
- | **[[2im1]], [[2im0]], [[2im2]], [[2im3]], [[2ily]], [[2ilz]] - PoRNAP (mutant) + nucleotide<br />
| + | |
- | **[[3n6m]], [[3n6n]] – EvRNAP + nucleotide<br />
| + | |
- | **[[3sfg]] – MnvRNAP + thio-uridine<br />
| + | |
- | **[[3sfu]] – MnvRNAP + ribavirine<br />
| + | |
- | **[[3upf]], [[3ur0]], [[4nru]], [[4o4r]] – MnvRNAP + inhibitor<br />
| + | |
- | **[[4lq3]], [[4lq9]] – RNAP + inhibitor – human norovirus <br />
| + | |
- | **[[3cdu ]]– CvRNAP + POP<br />
| + | |
- | **[[3eva]], [[3evb]], [[3evc]], [[3evd]], [[3eve]], [[3evf]], [[3evg]] – RNAP N terminal + SAH – Yellow fever virus<br />
| + | |
- | **[[1hi1]] – P6RNAP + NTP<br />
| + | |
- | **[[5cx6]], [[5cyr]] - TavRNAP + nucleotide<br />
| + | |
- | **[[5hmw]], [[5f3t]], [[5hmx]], [[5hmy]], [[5hn0]], [[5hmz]], [[5iq6]], [[5k5m]] - DevRNAP Ns5 + inhibitor<br />
| + | |
- | **[[5ehg]] - DevRNAP NS5 + SAM + inhibitor<br />
| + | |
- | **[[5goz]], [[5gp1]] - ZvRNAP NS5 + SAH + GTP <br />
| + | |
- | **[[5ltn]], [[5t2t]] - LcmvRNAP + inhibitor<br />
| + | |
- | | + | |
- | *'''Influenza virus polymerase acidic protein (or PA or subunit P2)'''
| + | |
- | | + | |
- | **[[3hw3]], [[3hw4]], [[3hw5]] - IvRNAP PA (mutant) + Mn + nucleotide – Influenza virus<br />
| + | |
- | **[[3hw6]], [[6fsb]] - IvRNAP PA (mutant) + Mn<br />
| + | |
- | **[[3wi0]] – IvRNAP PA (mutant)<br />
| + | |
- | **[[4w9s]], [[5fdd]], [[5fdg]], [[5i13]], [[5ieq]], [[5if2]], [[5if5]], [[5if7]], [[5if8]], [[5ifb]], [[5ifc]], [[5ifd]], [[5wa6]], [[5wa7]], [[5wb3]], [[5wap]], [[5w9g]], [[5w92]], [[5w44]], [[5v0u]] – IvRNAP PA + inhibitor<br />
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- | **[[5wg9]], [[5wfz]], [[5wfw]], [[5wfm]], [[5wf3]], [[5wei]], [[5wef]], [[5web]], [[5we9]], [[5we7]], [[5wdw]], [[5wdn]], [[5wdc]], [[5wct]], [[5wcs]], [[5w73]], [[5w7u]], [[5w3i]], [[5vrj]], [[5vqn]], [[5vpx]], [[5vpt]], [[5vp8]] – IvRNAP PA (mutant) + inhibitor<br />
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- | **[[3cm8]] – IvRNAP PA + RNA-directed RNA polymerase PA peptide<br />
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- | **[[4wrt]], [[4wsa]] – IvRNAP PA + PB2 + RNA-directed RNA polymerase PA + RNA<br />
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- | **[[4e5e]], [[4zqq]], [[5jht]], [[5jhv]] – IvRNAP PA residues 1-50, 73-196 + Mn<br />
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- | **[[4e5f]], [[4e5g]], [[4e5h]], [[4e5i]], [[4e5j]], [[4e5l]], [[4yyl]], [[4zhz]], [[4zi0]], [[6fs7]], [[6fs6]] – IvRNAP PA residues 1-50, 73-196 + Mn + inhibitor<br />
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- | **[[6fs8]] – IvRNAP PA residues 1-196 + Mn + inhibitor<br />
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- | **[[6fs9]] – IvRNAP PA residues 1-196 (mutant) + Mn + inhibitor<br />
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- | **[[3ebj]], [[2w69]] - IvRNAP PA residues 1-256<br />
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- | **[[4iuj]] - IvRNAP PA residues 254-713<br />
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- | *'''Influenza virus polymerase basic protein 2 (or RNAP subunit P3 or PB2))'''; Domains: cap-binding 318-483; Cap-binding and midlink 247-536; 627 538-693; NLS 694-753
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- | **[[4enf]], [[4u6o]], [[4j2r]], [[2vqz]], [[5ef9]], [[5eg9]] – IvRNAP PB2 cap-binding domain<br />
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- | **[[3cw4]] - IvRNAP PB2 627 + NLS domains <br />
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- | **[[2gmo]] - IvRNAP PB2 627 + NLS domains - NMR<br />
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- | **[[4eqk]], [[5efa]], [[5efc]] – IvRNAP PB2 cap-binding domain + GTP<br />
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- | **[[4nce]], [[3wi1]] – IvRNAP PB2 cap-binding domain (mutant) + GTP derivative<br />
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- | **[[4ncm]] – IvRNAP PB2 cap-binding domain (mutant) + inhibitor<br />
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- | **[[4p1u]], [[4yd0]], [[5buh]], [[5jun]], [[5jur]] - IvRNAP PB2 cap-binding domain + inhibitor<br />
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- | **[[6euy]], [[6eux]], [[6euv]] - IvRNAP PB2 cap-binding + midlink domains + inhibitor<br />
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- | **[[5wl0]] - IvRNAP PB2 cap-binding + midlink + 627 + NLS domains + inhibitor<br />
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- | **[[4uad]], [[4uae]], [[4uaf]] - IvRNAP PB2 + importin<br />
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- | **[[2vy6]] - IvRNAP PB2 627 + NLS domains<br />
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- | **[[2vy7]] - IvRNAP PB2 627 domain<br />
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- | **[[2vy8]] - IvRNAP PB2 627 domain (mutant) <br />
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- | *'''Influenza virus RNAP PA+PB1'''
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- | **[[2znl]] - IvRNAP PA + PB1<br />
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- | *'''Influenza virus RNAP PB1+PB2'''
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- | **[[2ztt]], [[3a1g]] - IvRNAP PB1 C terminal + RNAP PB2 N terminal<br />
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- | **[[3j9b]] - IvRNAP PB1+PB2 N terminal + RNA<br />
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- | *'''Influenza virus RNAP PA+PB1+PB2'''
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- | **[[4wsb]], [[5fmz]], [[5m3h]], [[5m3j]], [[5msg]], [[6f5o]], [[6evj]] - IvRNAP PB1 + IvRNAP PA + IvRNAP PB2 + RNA<br />
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- | **[[6evk]] - IvRNAP PB1 + IvRNAP PA + IvRNAP PB2 + RNA + GTP<br />
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- | **[[5d98]], [[5d9a]] - IvRNAP PB1 + IvRNAP PA + IvRNAP PB2<br />
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- | **[[6f5p]] - IvRNAP PB1 + IvRNAP PA + IvRNAP PB2 + polyAla<br />
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- | *'''Poly(A) RNA polymerase'''
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- | **[[3pq1]] – hRNAP (mutant)<br />
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- | **[[4lt6]] – hRNAP γ <br />
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- | **[[4nkt]] – SpRNAP (mutant) + UMPNPP <br />
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- | **[[4nku]] – SpRNAP (mutant) + RNA <br />
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- | **[[3nyb]] – yRNAP + AIR2<br />
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- | **[[4e7x]], [[4e80]], [[4e8f]], [[4ep7]], [[4fh3]] – fyRNAP Cid1 <br />
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- | **[[4fh5]], [[4fhp]], [[4fhv]], [[4fhw]], [[4fhy]] – fyRNAP Cid1 + nucleotide<br />
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- | **[[4ud4]], [[4ud5]] - fyRNAP Cid1 (mutant)<br />
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- | **[[4fhx]] – fyRNAP Cid1 (mutant) + ATP<br />
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- | **[[4zrl]] – CeRNAP gld-2 + germline development defective 3 – ''Caenorhabidis elegans'' <br />
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- | **[[5jnb]] – CeRNAP gld-2 (mutant) + RNP-8 <br />
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| | | |
- | }} | |
| == References == | | == References == |
| <references/> | | <references/> |
| [[Category:Topic Page]] | | [[Category:Topic Page]] |
| *Created with the participation of [[User:Craig T Martin|Craig T Martin]]. | | *Created with the participation of [[User:Craig T Martin|Craig T Martin]]. |