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5yvz

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Current revision (08:39, 22 November 2023) (edit) (undo)
 
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==Crystal structure of the Kdo hydroxylase KdoO, a non-heme Fe(II) alphaketoglutarate dependent dioxygenase in complex with alphaketoglutarate and Fe(III)==
==Crystal structure of the Kdo hydroxylase KdoO, a non-heme Fe(II) alphaketoglutarate dependent dioxygenase in complex with alphaketoglutarate and Fe(III)==
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<StructureSection load='5yvz' size='340' side='right' caption='[[5yvz]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
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<StructureSection load='5yvz' size='340' side='right'caption='[[5yvz]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5yvz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Meti4 Meti4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YVZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YVZ FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5yvz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methylacidiphilum_infernorum_V4 Methylacidiphilum infernorum V4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YVZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5YVZ FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=AKG:2-OXOGLUTARIC+ACID'>AKG</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5y7s|5y7s]], [[5yka|5yka]], [[5y9x|5y9x]], [[5y9y|5y9y]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=AKG:2-OXOGLUTARIC+ACID'>AKG</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Minf_1012 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=481448 METI4])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5yvz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yvz OCA], [https://pdbe.org/5yvz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5yvz RCSB], [https://www.ebi.ac.uk/pdbsum/5yvz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5yvz ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yvz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yvz OCA], [http://pdbe.org/5yvz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yvz RCSB], [http://www.ebi.ac.uk/pdbsum/5yvz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yvz ProSAT]</span></td></tr>
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</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/B3DUR4_METI4 B3DUR4_METI4]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Meti4]]
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[[Category: Large Structures]]
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[[Category: Chung, H S]]
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[[Category: Methylacidiphilum infernorum V4]]
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[[Category: Joo, S H]]
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[[Category: Chung HS]]
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[[Category: Pemble, C W]]
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[[Category: Joo SH]]
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[[Category: Raetz, C R]]
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[[Category: Pemble CW]]
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[[Category: Biosynthetic protein]]
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[[Category: Raetz CR]]
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[[Category: Deoxysugar dioxygenase]]
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[[Category: Kdo2-lipid a dioxygenase]]
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[[Category: Lps biosynthesis]]
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Current revision

Crystal structure of the Kdo hydroxylase KdoO, a non-heme Fe(II) alphaketoglutarate dependent dioxygenase in complex with alphaketoglutarate and Fe(III)

PDB ID 5yvz

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