This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3all

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:48, 4 October 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, mutant Y270A==
==Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, mutant Y270A==
-
<StructureSection load='3all' size='340' side='right' caption='[[3all]], [[Resolution|resolution]] 1.78&Aring;' scene=''>
+
<StructureSection load='3all' size='340' side='right'caption='[[3all]], [[Resolution|resolution]] 1.78&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3all]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mesorhizobium_japonicum_(strain_lmg_29417_/_cect_9101_/_maff_303099) Mesorhizobium japonicum (strain lmg 29417 / cect 9101 / maff 303099)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ALL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ALL FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3all]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mesorhizobium_japonicum_MAFF_303099 Mesorhizobium japonicum MAFF 303099]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ALL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ALL FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.78&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3alh|3alh]], [[3ali|3ali]], [[3alj|3alj]], [[3alk|3alk]], [[3alm|3alm]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">mlr6788 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266835 Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099)])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3all FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3all OCA], [https://pdbe.org/3all PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3all RCSB], [https://www.ebi.ac.uk/pdbsum/3all PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3all ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-hydroxy-2-methylpyridinecarboxylate_dioxygenase 3-hydroxy-2-methylpyridinecarboxylate dioxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.14.12.4 1.14.12.4] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3all FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3all OCA], [http://pdbe.org/3all PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3all RCSB], [http://www.ebi.ac.uk/pdbsum/3all PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3all ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q988D3_RHILO Q988D3_RHILO]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: 3-hydroxy-2-methylpyridinecarboxylate dioxygenase]]
+
[[Category: Large Structures]]
-
[[Category: Kamitori, S]]
+
[[Category: Mesorhizobium japonicum MAFF 303099]]
-
[[Category: Kobayashi, J]]
+
[[Category: Kamitori S]]
-
[[Category: Yagi, T]]
+
[[Category: Kobayashi J]]
-
[[Category: Yoshida, H]]
+
[[Category: Yagi T]]
-
[[Category: Yoshikane, Y]]
+
[[Category: Yoshida H]]
-
[[Category: Alpha/beta fold]]
+
[[Category: Yoshikane Y]]
-
[[Category: Oxidoreductase]]
+

Current revision

Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, mutant Y270A

PDB ID 3all

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools