This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5qgg

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:53, 15 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 5qgg is ON HOLD
+
==PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of NUDT7 in complex with FMOPL000693a==
-
 
+
<StructureSection load='5qgg' size='340' side='right'caption='[[5qgg]], [[Resolution|resolution]] 1.91&Aring;' scene=''>
-
Authors: Krojer, T., Talon, R., Fairhead, M., Diaz Saez, L., Bradley, A.R., Aimon, A., Collins, P., Brandao-Neto, J., Douangamath, A., Ruda, G.F., Szommer, T., Srikannathasan, V., Elkins, J., Spencer, J., London, N., Nelson, A., Brennan, P.E., Huber, K., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F.
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[5qgg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5QGG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5QGG FirstGlance]. <br>
-
Description: PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) --Crystal Structure of NUDT7 in complex with FMOPL000693a
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.91&#8491;</td></tr>
-
[[Category: Unreleased Structures]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=H2G:(2S)-1-{[(5-methylthiophen-2-yl)methyl]amino}propan-2-ol'>H2G</scene>, <scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene></td></tr>
-
[[Category: Spencer, J]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5qgg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5qgg OCA], [https://pdbe.org/5qgg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5qgg RCSB], [https://www.ebi.ac.uk/pdbsum/5qgg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5qgg ProSAT]</span></td></tr>
-
[[Category: Aimon, A]]
+
</table>
-
[[Category: Elkins, J]]
+
== Function ==
-
[[Category: Collins, P]]
+
[https://www.uniprot.org/uniprot/NUDT7_HUMAN NUDT7_HUMAN] Coenzyme A diphosphatase which mediates the cleavage of CoA, CoA esters and oxidized CoA with similar efficiencies, yielding 3',5'-ADP and the corresponding 4'-phosphopantetheine derivative as products. CoA into 3',5'-ADP and 4'-phosphopantetheine. Has no activity toward NDP-sugars, CDP-alcohols, (deoxy)nucleoside 5'-triphosphates, nucleoside 5'-di or monophosphates, diadenosine polyphosphates, NAD, NADH, NADP, NADPH or thymidine-5'-monophospho-p-nitrophenyl ester. May be required to eliminate oxidized CoA from peroxisomes, or regulate CoA and acyl-CoA levels in this organelle in response to metabolic demand. Does not play a role in U8 snoRNA decapping activity. Binds U8 snoRNA (By similarity).
-
[[Category: Huber, K]]
+
__TOC__
-
[[Category: Ruda, G.F]]
+
</StructureSection>
-
[[Category: Arrowsmith, C.H]]
+
[[Category: Homo sapiens]]
-
[[Category: Brandao-Neto, J]]
+
[[Category: Large Structures]]
-
[[Category: Diaz Saez, L]]
+
[[Category: Aimon A]]
-
[[Category: Fairhead, M]]
+
[[Category: Arrowsmith CH]]
-
[[Category: Von Delft, F]]
+
[[Category: Bountra C]]
-
[[Category: Bradley, A.R]]
+
[[Category: Bradley AR]]
-
[[Category: Talon, R]]
+
[[Category: Brandao-Neto J]]
-
[[Category: Brennan, P.E]]
+
[[Category: Brennan PE]]
-
[[Category: Edwards, A]]
+
[[Category: Collins P]]
-
[[Category: Douangamath, A]]
+
[[Category: Diaz Saez L]]
-
[[Category: Krojer, T]]
+
[[Category: Douangamath A]]
-
[[Category: Szommer, T]]
+
[[Category: Edwards A]]
-
[[Category: Srikannathasan, V]]
+
[[Category: Elkins J]]
-
[[Category: Bountra, C]]
+
[[Category: Fairhead M]]
-
[[Category: Nelson, A]]
+
[[Category: Huber K]]
-
[[Category: London, N]]
+
[[Category: Krojer T]]
 +
[[Category: London N]]
 +
[[Category: Nelson A]]
 +
[[Category: Ruda GF]]
 +
[[Category: Spencer J]]
 +
[[Category: Srikannathasan V]]
 +
[[Category: Szommer T]]
 +
[[Category: Talon R]]
 +
[[Category: Von Delft F]]

Current revision

PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of NUDT7 in complex with FMOPL000693a

PDB ID 5qgg

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5qgg"
Personal tools