6hyt

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "6hyt" [edit=sysop:move=sysop])
Current revision (15:25, 28 August 2019) (edit) (undo)
 
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 6hyt is ON HOLD
+
==Crystal structure of DHX8 helicase domain bound to ADP at 2.3 Angstrom==
 +
<StructureSection load='6hyt' size='340' side='right'caption='[[6hyt]], [[Resolution|resolution]] 2.33&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[6hyt]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6HYT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6HYT FirstGlance]. <br>
 +
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
 +
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/RNA_helicase RNA helicase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.4.13 3.6.4.13] </span></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6hyt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6hyt OCA], [http://pdbe.org/6hyt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6hyt RCSB], [http://www.ebi.ac.uk/pdbsum/6hyt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6hyt ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[[http://www.uniprot.org/uniprot/DHX8_HUMAN DHX8_HUMAN]] Facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome.<ref>PMID:8608946</ref>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
DHX8 is a crucial DEAH-box RNA helicase involved in splicing and required for the release of mature mRNA from the spliceosome. Here we report the biochemical characterization of full-length human DHX8 and the catalytically active helicase core DHX8Delta547, alongside crystal structures of DHX8Delta547 bound to ADP and a structure of DHX8Delta547 bound to poly(A)6 single-strand RNA. Our results reveal that DHX8 has an in vitro binding preference for adenine-rich RNA and that RNA binding triggers release of ADP through significant conformational flexibility in the conserved DEAH-, P-loop and hook-turn motifs. We demonstrate the importance of R620 and both the hook-turn and hook-loop regions for DHX8 helicase activity, and propose that the hook-turn acts as a gatekeeper to regulate directional movement of the 3' end of RNA through the RNA binding channel. This study provides an in-depth understanding of the activity of DHX8 and contributes insights into the RNA unwinding mechanisms of the DEAH-box helicase family.
-
Authors: Felisberto-Rodrigues, C., Thomas, J.C., McAndrew, P.C., Le Bihan, Y.V., Burke, R., Workman, P., van Montfort, R.L.M.
+
Structural and functional characterisation of human RNA helicase DHX8 provides insights into the mechanism of RNA-stimulated ADP release.,Felisberto-Rodrigues C, Thomas JC, McAndrew C, Le Bihan YV, Burke R, Workman P, van Montfort RLM Biochem J. 2019 Aug 13. pii: BCJ20190383. doi: 10.1042/BCJ20190383. PMID:31409651<ref>PMID:31409651</ref>
-
Description: Crystal structure of DHX8 helicase domain bound to ADP at 2.3 Angstrom
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
 +
<div class="pdbe-citations 6hyt" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: RNA helicase]]
 +
[[Category: Bihan, Y V.Le]]
[[Category: Burke, R]]
[[Category: Burke, R]]
[[Category: Felisberto-Rodrigues, C]]
[[Category: Felisberto-Rodrigues, C]]
-
[[Category: Van Montfort, R.L.M]]
+
[[Category: McAndrew, P C]]
 +
[[Category: Montfort, R L.M van]]
 +
[[Category: Thomas, J C]]
[[Category: Workman, P]]
[[Category: Workman, P]]
-
[[Category: Le Bihan, Y.V]]
+
[[Category: Helicase]]
-
[[Category: Mcandrew, P.C]]
+
[[Category: Rna]]
-
[[Category: Thomas, J.C]]
+
[[Category: Rna binding protein]]
 +
[[Category: Splicing]]

Current revision

Crystal structure of DHX8 helicase domain bound to ADP at 2.3 Angstrom

PDB ID 6hyt

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools