This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3bda

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:44, 1 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Glycogen Phosphorylase complex with 1(-D-glucopyranosyl) cyanuric acid==
==Glycogen Phosphorylase complex with 1(-D-glucopyranosyl) cyanuric acid==
-
<StructureSection load='3bda' size='340' side='right' caption='[[3bda]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+
<StructureSection load='3bda' size='340' side='right'caption='[[3bda]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3bda]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BDA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BDA FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3bda]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BDA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BDA FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=C4B:1-BETA-D-GLUCOPYRANOSYL-1,3,5-TRIAZINANE-2,4,6-TRIONE'>C4B</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3bcr|3bcr]], [[3bcs|3bcs]], [[3bcu|3bcu]], [[3bd6|3bd6]], [[3bd7|3bd7]], [[3bd8|3bd8]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=C4B:1-BETA-D-GLUCOPYRANOSYL-1,3,5-TRIAZINANE-2,4,6-TRIONE'>C4B</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphorylase Phosphorylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.1 2.4.1.1] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bda FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bda OCA], [https://pdbe.org/3bda PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bda RCSB], [https://www.ebi.ac.uk/pdbsum/3bda PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bda ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bda FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bda OCA], [http://pdbe.org/3bda PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3bda RCSB], [http://www.ebi.ac.uk/pdbsum/3bda PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3bda ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/PYGM_RABIT PYGM_RABIT]] Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
+
[https://www.uniprot.org/uniprot/PYGM_RABIT PYGM_RABIT] Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 23: Line 22:
==See Also==
==See Also==
-
*[[Glycogen Phosphorylase|Glycogen Phosphorylase]]
+
*[[Glycogen phosphorylase 3D structures|Glycogen phosphorylase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Oryctolagus cuniculus]]
[[Category: Oryctolagus cuniculus]]
-
[[Category: Phosphorylase]]
+
[[Category: Chrysina ED]]
-
[[Category: Chrysina, E D]]
+
[[Category: Hadjiloi T]]
-
[[Category: Hadjiloi, T]]
+
[[Category: Hayes JM]]
-
[[Category: Hayes, J M]]
+
[[Category: Oikonomakos NG]]
-
[[Category: Oikonomakos, N G]]
+
[[Category: Sovantzis DA]]
-
[[Category: Sovantzis, D A]]
+
[[Category: Zographos SE]]
-
[[Category: Zographos, S E]]
+
-
[[Category: Allosteric enzyme]]
+
-
[[Category: Carbohydrate metabolism]]
+
-
[[Category: Glycogen metabolism]]
+
-
[[Category: Glycogenolysis]]
+
-
[[Category: Glycosyltransferase]]
+
-
[[Category: Nucleotide-binding]]
+
-
[[Category: Phosphoprotein]]
+
-
[[Category: Pyridoxal phosphate]]
+
-
[[Category: Transferase]]
+
-
[[Category: Type 2 diabetes]]
+

Current revision

Glycogen Phosphorylase complex with 1(-D-glucopyranosyl) cyanuric acid

PDB ID 3bda

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools