6i1o

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'''Unreleased structure'''
 
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The entry 6i1o is ON HOLD until Paper Publication
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==Fab fragment of an antibody selective for wild-type alpha-1-antitrypsin==
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<StructureSection load='6i1o' size='340' side='right'caption='[[6i1o]], [[Resolution|resolution]] 1.93&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6i1o]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6I1O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6I1O FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.93&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6i1o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6i1o OCA], [https://pdbe.org/6i1o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6i1o RCSB], [https://www.ebi.ac.uk/pdbsum/6i1o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6i1o ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The alpha-1-antitrypsin (or alpha-1-antitrypsin, A1AT) Z variant is the primary cause of severe A1AT deficiency and forms polymeric chains that aggregate in the endoplasmic reticulum of hepatocytes. Around 2%-5% of Europeans are heterozygous for the Z and WT M allele, and there is evidence of increased risk of liver disease when compared with MM A1AT individuals. We have shown that Z and M A1AT can copolymerize in cell models, but there has been no direct observation of heteropolymer formation in vivo. To this end, we developed a monoclonal antibody (mAb2H2) that specifically binds to M in preference to Z A1AT, localized its epitope using crystallography to a region perturbed by the Z (Glu342Lys) substitution, and used Fab fragments to label polymers isolated from an MZ heterozygote liver explant. Glu342 is critical to the affinity of mAb2H2, since it also recognized the mild S-deficiency variant (Glu264Val) present in circulating polymers from SZ heterozygotes. Negative-stain electron microscopy of the Fab2H2-labeled liver polymers revealed that M comprises around 6% of the polymer subunits in the MZ liver sample. These data demonstrate that Z A1AT can form heteropolymers with polymerization-inert variants in vivo with implications for liver disease in heterozygous individuals.
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Authors: Laffranchi, M., Elliston, E.L.K., Miranda, E., Perez, J., Fra, A., Lomas, D.A., Irving, J.A.
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Intrahepatic heteropolymerization of M and Z alpha-1-antitrypsin.,Laffranchi M, Elliston EL, Miranda E, Perez J, Ronzoni R, Jagger AM, Heyer-Chauhan N, Brantly ML, Fra A, Lomas DA, Irving JA JCI Insight. 2020 Jul 23;5(14). pii: 135459. doi: 10.1172/jci.insight.135459. PMID:32699193<ref>PMID:32699193</ref>
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Description: Fab fragment of an antibody selective for wild-type alpha-1-antitrypsin
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Irving, J.A]]
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<div class="pdbe-citations 6i1o" style="background-color:#fffaf0;"></div>
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[[Category: Miranda, E]]
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[[Category: Laffranchi, M]]
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==See Also==
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[[Category: Perez, J]]
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*[[Monoclonal Antibodies 3D structures|Monoclonal Antibodies 3D structures]]
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[[Category: Elliston, E.L.K]]
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== References ==
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[[Category: Fra, A]]
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<references/>
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[[Category: Lomas, D.A]]
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Mus musculus]]
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[[Category: Elliston ELK]]
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[[Category: Fra A]]
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[[Category: Irving JA]]
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[[Category: Laffranchi M]]
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[[Category: Lomas DA]]
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[[Category: Miranda E]]
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[[Category: Perez J]]

Current revision

Fab fragment of an antibody selective for wild-type alpha-1-antitrypsin

PDB ID 6i1o

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