This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6etc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:56, 20 May 2020) (edit) (undo)
 
Line 1: Line 1:
==Crystal Structure of Human gamma-D-crystallin Mutant P23T+R36S at 1.2 Angstroms Resolution==
==Crystal Structure of Human gamma-D-crystallin Mutant P23T+R36S at 1.2 Angstroms Resolution==
-
<StructureSection load='6etc' size='340' side='right' caption='[[6etc]], [[Resolution|resolution]] 1.20&Aring;' scene=''>
+
<StructureSection load='6etc' size='340' side='right'caption='[[6etc]], [[Resolution|resolution]] 1.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6etc]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ETC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ETC FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6etc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ETC OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6ETC FirstGlance]. <br>
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6eta|6eta]]</td></tr>
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6eta|6eta]]</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6etc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6etc OCA], [http://pdbe.org/6etc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6etc RCSB], [http://www.ebi.ac.uk/pdbsum/6etc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6etc ProSAT]</span></td></tr>
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CRYGD, CRYG4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6etc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6etc OCA], [http://pdbe.org/6etc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6etc RCSB], [http://www.ebi.ac.uk/pdbsum/6etc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6etc ProSAT]</span></td></tr>
</table>
</table>
== Disease ==
== Disease ==
Line 11: Line 12:
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/CRGD_HUMAN CRGD_HUMAN]] Crystallins are the dominant structural components of the vertebrate eye lens.
[[http://www.uniprot.org/uniprot/CRGD_HUMAN CRGD_HUMAN]] Crystallins are the dominant structural components of the vertebrate eye lens.
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Protein crystal production is a major bottleneck in the structural characterization of proteins. To advance beyond large-scale screening, rational strategies for protein crystallization are crucial. Understanding how chemical anisotropy (or patchiness) of the protein surface, due to the variety of amino-acid side chains in contact with solvent, contributes to protein-protein contact formation in the crystal lattice is a major obstacle to predicting and optimizing crystallization. The relative scarcity of sophisticated theoretical models that include sufficient detail to link collective behavior, captured in protein phase diagrams, and molecular-level details, determined from high-resolution structural information, is a further barrier. Here, we present two crystal structures for the P23T + R36S mutant of gammaD-crystallin, each with opposite solubility behavior: one melts when heated, the other when cooled. When combined with the protein phase diagram and a tailored patchy particle model, we show that a single temperature-dependent interaction is sufficient to stabilize the inverted solubility crystal. This contact, at the P23T substitution site, relates to a genetic cataract and reveals at a molecular level the origin of the lowered and retrograde solubility of the protein. Our results show that the approach employed here may present a productive strategy for the rationalization of protein crystallization.
 +
 +
Temperature-Dependent Interactions Explain Normal and Inverted Solubility in a gammaD-Crystallin Mutant.,Khan AR, James S, Quinn MK, Altan I, Charbonneau P, McManus JJ Biophys J. 2019 Sep 3;117(5):930-937. doi: 10.1016/j.bpj.2019.07.019. Epub 2019, Jul 19. PMID:31422822<ref>PMID:31422822</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 6etc" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Crystallin 3D structures|Crystallin 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Human]]
 +
[[Category: Large Structures]]
[[Category: Khan, A R]]
[[Category: Khan, A R]]
[[Category: McManus, J]]
[[Category: McManus, J]]
[[Category: Human eye lens protein age-related cataract structural protein]]
[[Category: Human eye lens protein age-related cataract structural protein]]
[[Category: Structural protein]]
[[Category: Structural protein]]

Current revision

Crystal Structure of Human gamma-D-crystallin Mutant P23T+R36S at 1.2 Angstroms Resolution

PDB ID 6etc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools