6i4a

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "6i4a" [edit=sysop:move=sysop])
Current revision (11:46, 24 January 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 6i4a is ON HOLD
+
==Structure of P. aeruginosa LpxC with compound 18d: (2R)-N-Hydroxy-4-(6-((1-(hydroxymethyl)cyclopropyl)buta-1,3-diyn-1-yl)-3-oxo-1H-pyrrolo[1,2-c]imidazol-2(3H)-yl)-2-methyl-2-(methylsulfonyl)butanamide==
 +
<StructureSection load='6i4a' size='340' side='right'caption='[[6i4a]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[6i4a]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_LESB58 Pseudomonas aeruginosa LESB58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6I4A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6I4A FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.251&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=H2Q:(2~{R})-4-[6-[4-[1-(hydroxymethyl)cyclopropyl]buta-1,3-diynyl]-3-oxidanylidene-1~{H}-pyrrolo[1,2-c]imidazol-2-yl]-2-methyl-2-methylsulfonyl-~{N}-oxidanyl-butanamide'>H2Q</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6i4a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6i4a OCA], [https://pdbe.org/6i4a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6i4a RCSB], [https://www.ebi.ac.uk/pdbsum/6i4a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6i4a ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/LPXC_PSEA8 LPXC_PSEA8] Catalyzes the hydrolysis of UDP-3-O-myristoyl-N-acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis.
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
UDP-3-O-((R)-3-hydroxymyristoyl)-N-glucosamine deacetylase (LpxC) is as an attractive target for the discovery and development of novel antibacterial drugs to address the critical medical need created by multi-drug resistant Gram-negative bacteria. Using a scaffold hopping approach on a known family of methylsulfone hydroxamate LpxC inhibitors, several hit series eliciting potent antibacterial activities against Enterobacteriaceae and Pseudomonas aeruginosa were identified. Subsequent hit-to-lead optimization, using co-crystal structures of inhibitors bound to Pseudomonas aeruginosa LpxC as guides, resulted in the discovery of multiple chemical series based on i) isoindolin-1-ones, ii) 4,5-dihydro-6H-thieno[2,3-c]pyrrol-6-ones and iii) 1,2-dihydro-3H-pyrrolo[1,2-c]imidazole-3-ones. Synthetic methods, antibacterial activities and relative binding affinities, as well as physico-chemical properties that allowed compound prioritization are presented. Finally, in vivo properties of lead molecules which belong to the most promising pyrrolo-imidazolone series such as 18d, are discussed.
-
Authors: Surivet, J.-P., Panchaud, P., Specklin, J.-L., Diethelm, S., Blumstein, A.-C., Gauvin, J.-C., Jacob, L., Masse, F., Mathieu, G., Mirre, A., Schmitt, C., Enderlin-Paput, M., Lange, R., Bur, D., Tidten-Luksch, N., Gnerre, C., Seeland, S., Hermann, C., Locher, H.H., Seiler, P., Mac Sweeney, A., Hubschwerlen, C., Ritz, D., Rueedi, G.
+
Discovery of Novel Inhibitors of LpxC Displaying Potent In Vitro Activity against Gram-Negative Bacteria.,Surivet JP, Panchaud P, Specklin JL, Diethelm S, Blumstein AC, Gauvin JC, Jacob L, Masse F, Mathieu G, Mirre A, Schmitt C, Lange R, Tidten-Luksch N, Gnerre C, Seeland S, Herrmann C, Seiler P, Enderlin-Paput M, Mac Sweeney A, Wicki M, Hubschwerlen C, Ritz D, Rueedi G J Med Chem. 2019 Dec 5. doi: 10.1021/acs.jmedchem.9b01604. PMID:31804826<ref>PMID:31804826</ref>
-
Description: Structure of P. aeruginosa LpxC with compound 18d: (2R)-N-Hydroxy-4-(6-((1-(hydroxymethyl)cyclopropyl)buta-1,3-diyn-1-yl)-3-oxo-1H-pyrrolo[1,2-c]imidazol-2(3H)-yl)-2-methyl-2-(methylsulfonyl)butanamide
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Gauvin, J.-C]]
+
<div class="pdbe-citations 6i4a" style="background-color:#fffaf0;"></div>
-
[[Category: Hubschwerlen, C]]
+
 
-
[[Category: Specklin, J.-L]]
+
==See Also==
-
[[Category: Jacob, L]]
+
*[[UDP-3-O-acyl-N-acetylglucosamine deacetylase|UDP-3-O-acyl-N-acetylglucosamine deacetylase]]
-
[[Category: Schmitt, C]]
+
== References ==
-
[[Category: Rueedi, G]]
+
<references/>
-
[[Category: Hermann, C]]
+
__TOC__
-
[[Category: Enderlin-Paput, M]]
+
</StructureSection>
-
[[Category: Surivet, J.-P]]
+
[[Category: Large Structures]]
-
[[Category: Bur, D]]
+
[[Category: Pseudomonas aeruginosa LESB58]]
-
[[Category: Mirre, A]]
+
[[Category: Blumstein A-C]]
-
[[Category: Diethelm, S]]
+
[[Category: Bur D]]
-
[[Category: Seiler, P]]
+
[[Category: Diethelm S]]
-
[[Category: Tidten-Luksch, N]]
+
[[Category: Enderlin-Paput M]]
-
[[Category: Mac Sweeney, A]]
+
[[Category: Gauvin J-C]]
-
[[Category: Seeland, S]]
+
[[Category: Gnerre C]]
-
[[Category: Lange, R]]
+
[[Category: Hermann C]]
-
[[Category: Ritz, D]]
+
[[Category: Hubschwerlen C]]
-
[[Category: Mathieu, G]]
+
[[Category: Jacob L]]
-
[[Category: Locher, H.H]]
+
[[Category: Lange R]]
-
[[Category: Masse, F]]
+
[[Category: Locher HH]]
-
[[Category: Blumstein, A.-C]]
+
[[Category: Mac Sweeney A]]
-
[[Category: Gnerre, C]]
+
[[Category: Masse F]]
-
[[Category: Panchaud, P]]
+
[[Category: Mathieu G]]
 +
[[Category: Mirre A]]
 +
[[Category: Panchaud P]]
 +
[[Category: Ritz D]]
 +
[[Category: Rueedi G]]
 +
[[Category: Schmitt C]]
 +
[[Category: Seeland S]]
 +
[[Category: Seiler P]]
 +
[[Category: Specklin J-L]]
 +
[[Category: Surivet J-P]]
 +
[[Category: Tidten-Luksch N]]

Current revision

Structure of P. aeruginosa LpxC with compound 18d: (2R)-N-Hydroxy-4-(6-((1-(hydroxymethyl)cyclopropyl)buta-1,3-diyn-1-yl)-3-oxo-1H-pyrrolo[1,2-c]imidazol-2(3H)-yl)-2-methyl-2-(methylsulfonyl)butanamide

PDB ID 6i4a

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools