6i4a
From Proteopedia
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- | '''Unreleased structure''' | ||
- | + | ==Structure of P. aeruginosa LpxC with compound 18d: (2R)-N-Hydroxy-4-(6-((1-(hydroxymethyl)cyclopropyl)buta-1,3-diyn-1-yl)-3-oxo-1H-pyrrolo[1,2-c]imidazol-2(3H)-yl)-2-methyl-2-(methylsulfonyl)butanamide== | |
+ | <StructureSection load='6i4a' size='340' side='right'caption='[[6i4a]], [[Resolution|resolution]] 2.25Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[6i4a]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_LESB58 Pseudomonas aeruginosa LESB58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6I4A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6I4A FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.251Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=H2Q:(2~{R})-4-[6-[4-[1-(hydroxymethyl)cyclopropyl]buta-1,3-diynyl]-3-oxidanylidene-1~{H}-pyrrolo[1,2-c]imidazol-2-yl]-2-methyl-2-methylsulfonyl-~{N}-oxidanyl-butanamide'>H2Q</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6i4a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6i4a OCA], [https://pdbe.org/6i4a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6i4a RCSB], [https://www.ebi.ac.uk/pdbsum/6i4a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6i4a ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/LPXC_PSEA8 LPXC_PSEA8] Catalyzes the hydrolysis of UDP-3-O-myristoyl-N-acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis. | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | UDP-3-O-((R)-3-hydroxymyristoyl)-N-glucosamine deacetylase (LpxC) is as an attractive target for the discovery and development of novel antibacterial drugs to address the critical medical need created by multi-drug resistant Gram-negative bacteria. Using a scaffold hopping approach on a known family of methylsulfone hydroxamate LpxC inhibitors, several hit series eliciting potent antibacterial activities against Enterobacteriaceae and Pseudomonas aeruginosa were identified. Subsequent hit-to-lead optimization, using co-crystal structures of inhibitors bound to Pseudomonas aeruginosa LpxC as guides, resulted in the discovery of multiple chemical series based on i) isoindolin-1-ones, ii) 4,5-dihydro-6H-thieno[2,3-c]pyrrol-6-ones and iii) 1,2-dihydro-3H-pyrrolo[1,2-c]imidazole-3-ones. Synthetic methods, antibacterial activities and relative binding affinities, as well as physico-chemical properties that allowed compound prioritization are presented. Finally, in vivo properties of lead molecules which belong to the most promising pyrrolo-imidazolone series such as 18d, are discussed. | ||
- | + | Discovery of Novel Inhibitors of LpxC Displaying Potent In Vitro Activity against Gram-Negative Bacteria.,Surivet JP, Panchaud P, Specklin JL, Diethelm S, Blumstein AC, Gauvin JC, Jacob L, Masse F, Mathieu G, Mirre A, Schmitt C, Lange R, Tidten-Luksch N, Gnerre C, Seeland S, Herrmann C, Seiler P, Enderlin-Paput M, Mac Sweeney A, Wicki M, Hubschwerlen C, Ritz D, Rueedi G J Med Chem. 2019 Dec 5. doi: 10.1021/acs.jmedchem.9b01604. PMID:31804826<ref>PMID:31804826</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
- | [[Category: | + | <div class="pdbe-citations 6i4a" style="background-color:#fffaf0;"></div> |
- | [[Category: | + | |
- | [[Category: | + | ==See Also== |
- | [[Category: | + | *[[UDP-3-O-acyl-N-acetylglucosamine deacetylase|UDP-3-O-acyl-N-acetylglucosamine deacetylase]] |
- | [[Category: | + | == References == |
- | [[Category: | + | <references/> |
- | [[Category: Hermann | + | __TOC__ |
- | [[Category: | + | </StructureSection> |
- | [[Category: | + | [[Category: Large Structures]] |
- | [[Category: | + | [[Category: Pseudomonas aeruginosa LESB58]] |
- | [[Category: | + | [[Category: Blumstein A-C]] |
- | [[Category: | + | [[Category: Bur D]] |
- | [[Category: | + | [[Category: Diethelm S]] |
- | [[Category: | + | [[Category: Enderlin-Paput M]] |
- | [[Category: | + | [[Category: Gauvin J-C]] |
- | [[Category: | + | [[Category: Gnerre C]] |
- | [[Category: | + | [[Category: Hermann C]] |
- | [[Category: | + | [[Category: Hubschwerlen C]] |
- | [[Category: | + | [[Category: Jacob L]] |
- | [[Category: | + | [[Category: Lange R]] |
- | [[Category: | + | [[Category: Locher HH]] |
- | [[Category: | + | [[Category: Mac Sweeney A]] |
- | [[Category: | + | [[Category: Masse F]] |
- | [[Category: | + | [[Category: Mathieu G]] |
+ | [[Category: Mirre A]] | ||
+ | [[Category: Panchaud P]] | ||
+ | [[Category: Ritz D]] | ||
+ | [[Category: Rueedi G]] | ||
+ | [[Category: Schmitt C]] | ||
+ | [[Category: Seeland S]] | ||
+ | [[Category: Seiler P]] | ||
+ | [[Category: Specklin J-L]] | ||
+ | [[Category: Surivet J-P]] | ||
+ | [[Category: Tidten-Luksch N]] |
Current revision
Structure of P. aeruginosa LpxC with compound 18d: (2R)-N-Hydroxy-4-(6-((1-(hydroxymethyl)cyclopropyl)buta-1,3-diyn-1-yl)-3-oxo-1H-pyrrolo[1,2-c]imidazol-2(3H)-yl)-2-methyl-2-(methylsulfonyl)butanamide
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Categories: Large Structures | Pseudomonas aeruginosa LESB58 | Blumstein A-C | Bur D | Diethelm S | Enderlin-Paput M | Gauvin J-C | Gnerre C | Hermann C | Hubschwerlen C | Jacob L | Lange R | Locher HH | Mac Sweeney A | Masse F | Mathieu G | Mirre A | Panchaud P | Ritz D | Rueedi G | Schmitt C | Seeland S | Seiler P | Specklin J-L | Surivet J-P | Tidten-Luksch N