6dls

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:07, 22 May 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==PRPP Riboswitch bound to PRPP, thallium acetate soaked structure==
==PRPP Riboswitch bound to PRPP, thallium acetate soaked structure==
-
<StructureSection load='6dls' size='340' side='right' caption='[[6dls]], [[Resolution|resolution]] 2.88&Aring;' scene=''>
+
<StructureSection load='6dls' size='340' side='right'caption='[[6dls]], [[Resolution|resolution]] 2.88&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6dls]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DLS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6DLS FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6dls]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Syntrophothermus_lipocalidus_DSM_12680 Syntrophothermus lipocalidus DSM 12680]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DLS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6DLS FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PRP:ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC+ACID'>PRP</scene>, <scene name='pdbligand=TL:THALLIUM+(I)+ION'>TL</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.885&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CCC:CYTIDINE-5-PHOSPHATE-2,3-CYCLIC+PHOSPHATE'>CCC</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CCC:CYTIDINE-5-PHOSPHATE-2,3-CYCLIC+PHOSPHATE'>CCC</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PRP:ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC+ACID'>PRP</scene>, <scene name='pdbligand=TL:THALLIUM+(I)+ION'>TL</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6dls FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dls OCA], [http://pdbe.org/6dls PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6dls RCSB], [http://www.ebi.ac.uk/pdbsum/6dls PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6dls ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6dls FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dls OCA], [https://pdbe.org/6dls PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6dls RCSB], [https://www.ebi.ac.uk/pdbsum/6dls PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6dls ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 17: Line 17:
</div>
</div>
<div class="pdbe-citations 6dls" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 6dls" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Riboswitch 3D structures|Riboswitch 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Peselis, A]]
+
[[Category: Large Structures]]
-
[[Category: Serganov, A]]
+
[[Category: Syntrophothermus lipocalidus DSM 12680]]
-
[[Category: Non-coding]]
+
[[Category: Peselis A]]
-
[[Category: Riboswitch]]
+
[[Category: Serganov A]]
-
[[Category: Rna]]
+
-
[[Category: Ykkc]]
+

Current revision

PRPP Riboswitch bound to PRPP, thallium acetate soaked structure

PDB ID 6dls

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools