6dmd

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==ppGpp Riboswitch bound to ppGpp, manganese chloride structure==
==ppGpp Riboswitch bound to ppGpp, manganese chloride structure==
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<StructureSection load='6dmd' size='340' side='right' caption='[[6dmd]], [[Resolution|resolution]] 2.65&Aring;' scene=''>
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<StructureSection load='6dmd' size='340' side='right'caption='[[6dmd]], [[Resolution|resolution]] 2.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6dmd]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DMD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6DMD FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6dmd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfobacillus_acidophilus_DSM_10332 Sulfobacillus acidophilus DSM 10332]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DMD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6DMD FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=G4P:GUANOSINE-5,3-TETRAPHOSPHATE'>G4P</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.65&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CCC:CYTIDINE-5-PHOSPHATE-2,3-CYCLIC+PHOSPHATE'>CCC</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CCC:CYTIDINE-5-PHOSPHATE-2,3-CYCLIC+PHOSPHATE'>CCC</scene>, <scene name='pdbligand=G4P:GUANOSINE-5,3-TETRAPHOSPHATE'>G4P</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6dmd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dmd OCA], [http://pdbe.org/6dmd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6dmd RCSB], [http://www.ebi.ac.uk/pdbsum/6dmd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6dmd ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6dmd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dmd OCA], [https://pdbe.org/6dmd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6dmd RCSB], [https://www.ebi.ac.uk/pdbsum/6dmd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6dmd ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
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</div>
</div>
<div class="pdbe-citations 6dmd" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 6dmd" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Riboswitch 3D structures|Riboswitch 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Peselis, A]]
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[[Category: Large Structures]]
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[[Category: Serganov, A]]
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[[Category: Sulfobacillus acidophilus DSM 10332]]
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[[Category: Non-coding]]
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[[Category: Peselis A]]
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[[Category: Riboswitch]]
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[[Category: Serganov A]]
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[[Category: Rna]]
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[[Category: Ykkc]]
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Current revision

ppGpp Riboswitch bound to ppGpp, manganese chloride structure

PDB ID 6dmd

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