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2yqm

From Proteopedia

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[[Image:2yqm.gif|left|200px]]
 
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{{Structure
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==Solution structure of the FYVE domain in zinc finger FYVE domain-containing protein 12==
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|PDB= 2yqm |SIZE=350|CAPTION= <scene name='initialview01'>2yqm</scene>
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<StructureSection load='2yqm' size='340' side='right'caption='[[2yqm]]' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
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<table><tr><td colspan='2'>[[2yqm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YQM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YQM FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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|GENE= RUFY1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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|DOMAIN=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yqm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yqm OCA], [https://pdbe.org/2yqm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yqm RCSB], [https://www.ebi.ac.uk/pdbsum/2yqm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yqm ProSAT], [https://www.topsan.org/Proteins/RSGI/2yqm TOPSAN]</span></td></tr>
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|RELATEDENTRY=
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</table>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yqm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yqm OCA], [http://www.ebi.ac.uk/pdbsum/2yqm PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2yqm RCSB]</span>
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== Function ==
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}}
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[https://www.uniprot.org/uniprot/RUFY1_HUMAN RUFY1_HUMAN] Binds phospholipid vesicles containing phosphatidylinositol 3-phosphate and participates in early endosomal trafficking.<ref>PMID:14617813</ref>
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== Evolutionary Conservation ==
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'''Solution structure of the FYVE domain in zinc finger FYVE domain-containing protein 12'''
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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==About this Structure==
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yq/2yqm_consurf.spt"</scriptWhenChecked>
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2YQM is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YQM OCA].
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yqm ConSurf].
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<div style="clear:both"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: He, F.]]
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[[Category: He F]]
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[[Category: Inoue, M.]]
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[[Category: Inoue M]]
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[[Category: Kigawa, T.]]
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[[Category: Kigawa T]]
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[[Category: Muto, Y.]]
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[[Category: Muto Y]]
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[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
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[[Category: Shirouzu M]]
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[[Category: Shirouzu, M.]]
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[[Category: Terada T]]
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[[Category: Terada, T.]]
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[[Category: Yokoyama S]]
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[[Category: Yokoyama, S.]]
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[[Category: fyve domain]]
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[[Category: national project on protein structural and functional analyse]]
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[[Category: nmr]]
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[[Category: nppsfa]]
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[[Category: protein transport]]
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[[Category: riken structural genomics/proteomics initiative]]
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[[Category: rsgi]]
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[[Category: structural genomic]]
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[[Category: zinc finger fyve domain-containing protein 12]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:14:31 2008''
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Current revision

Solution structure of the FYVE domain in zinc finger FYVE domain-containing protein 12

PDB ID 2yqm

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