This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ysw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:05, 25 October 2023) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ysw.jpg|left|200px]]
 
-
{{Structure
+
==Crystal Structure of the 3-dehydroquinate dehydratase from Aquifex aeolicus VF5==
-
|PDB= 2ysw |SIZE=350|CAPTION= <scene name='initialview01'>2ysw</scene>, resolution 2.25&Aring;
+
<StructureSection load='2ysw' size='340' side='right'caption='[[2ysw]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[2ysw]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus_VF5 Aquifex aeolicus VF5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YSW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YSW FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/3-dehydroquinate_dehydratase 3-dehydroquinate dehydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.10 4.2.1.10] </span>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
-
|GENE=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ysw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ysw OCA], [https://pdbe.org/2ysw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ysw RCSB], [https://www.ebi.ac.uk/pdbsum/2ysw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ysw ProSAT], [https://www.topsan.org/Proteins/RSGI/2ysw TOPSAN]</span></td></tr>
-
|DOMAIN=
+
</table>
-
|RELATEDENTRY=[[2egz|2EGZ]]
+
== Function ==
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ysw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ysw OCA], [http://www.ebi.ac.uk/pdbsum/2ysw PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2ysw RCSB]</span>
+
[https://www.uniprot.org/uniprot/AROD_AQUAE AROD_AQUAE]
-
}}
+
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ys/2ysw_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ysw ConSurf].
 +
<div style="clear:both"></div>
-
'''Crystal Structure of the 3-dehydroquinate dehydratase from Aquifex aeolicus VF5'''
+
==See Also==
-
 
+
*[[Dehydroquinase 3D structures|Dehydroquinase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
2YSW is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YSW OCA].
+
[[Category: Aquifex aeolicus VF5]]
-
[[Category: 3-dehydroquinate dehydratase]]
+
[[Category: Large Structures]]
-
[[Category: Aquifex aeolicus]]
+
[[Category: Chen L]]
-
[[Category: Single protein]]
+
[[Category: Chrzas J]]
-
[[Category: Chen, L.]]
+
[[Category: Ebihara A]]
-
[[Category: Chrzas, J.]]
+
[[Category: Fu ZQ]]
-
[[Category: Ebihara, A.]]
+
[[Category: Kumarevel TS]]
-
[[Category: Fu, Z Q.]]
+
[[Category: Kuramitsu S]]
-
[[Category: Kumarevel, T S.]]
+
[[Category: Tanaka T]]
-
[[Category: Kuramitsu, S.]]
+
[[Category: Wang BC]]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[[Category: Yokoyama S]]
-
[[Category: Tanaka, T.]]
+
-
[[Category: Wang, B C.]]
+
-
[[Category: Yokoyama, S.]]
+
-
[[Category: aquifex aeolicus vf5]]
+
-
[[Category: lyase]]
+
-
[[Category: national project on protein structural and functional analyse]]
+
-
[[Category: nppsfa]]
+
-
[[Category: riken structural genomics/proteomics initiative]]
+
-
[[Category: rsgi]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:15:08 2008''
+

Current revision

Crystal Structure of the 3-dehydroquinate dehydratase from Aquifex aeolicus VF5

PDB ID 2ysw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2ysw"
Personal tools