This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6i47

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:46, 24 January 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 6i47 is ON HOLD until Paper Publication
+
==Structure of P. aeruginosa LpxC with compound 10: (2RS)-4-(5-(2-Fluoro-4-methoxyphenyl)-1-oxoisoindolin-2-yl)-N-hydroxy-2-methyl-2-(methylsulfonyl)butanamide==
 +
<StructureSection load='6i47' size='340' side='right'caption='[[6i47]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[6i47]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_LESB58 Pseudomonas aeruginosa LESB58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6I47 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6I47 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=UNY:(2~{R})-4-[6-(2-fluoranyl-4-methoxy-phenyl)-3-oxidanylidene-1~{H}-isoindol-2-yl]-2-methyl-2-methylsulfonyl-~{N}-oxidanyl-butanamide'>UNY</scene>, <scene name='pdbligand=UNZ:(2~{S})-4-[6-(2-fluoranyl-4-methoxy-phenyl)-3-oxidanylidene-1~{H}-isoindol-2-yl]-2-methyl-2-methylsulfonyl-~{N}-oxidanyl-butanamide'>UNZ</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6i47 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6i47 OCA], [https://pdbe.org/6i47 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6i47 RCSB], [https://www.ebi.ac.uk/pdbsum/6i47 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6i47 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/LPXC_PSEA8 LPXC_PSEA8] Catalyzes the hydrolysis of UDP-3-O-myristoyl-N-acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis.
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
UDP-3-O-((R)-3-hydroxymyristoyl)-N-glucosamine deacetylase (LpxC) is as an attractive target for the discovery and development of novel antibacterial drugs to address the critical medical need created by multi-drug resistant Gram-negative bacteria. Using a scaffold hopping approach on a known family of methylsulfone hydroxamate LpxC inhibitors, several hit series eliciting potent antibacterial activities against Enterobacteriaceae and Pseudomonas aeruginosa were identified. Subsequent hit-to-lead optimization, using co-crystal structures of inhibitors bound to Pseudomonas aeruginosa LpxC as guides, resulted in the discovery of multiple chemical series based on i) isoindolin-1-ones, ii) 4,5-dihydro-6H-thieno[2,3-c]pyrrol-6-ones and iii) 1,2-dihydro-3H-pyrrolo[1,2-c]imidazole-3-ones. Synthetic methods, antibacterial activities and relative binding affinities, as well as physico-chemical properties that allowed compound prioritization are presented. Finally, in vivo properties of lead molecules which belong to the most promising pyrrolo-imidazolone series such as 18d, are discussed.
-
Authors: Surivet, J.-P., Panchaud, P., Specklin, J.-L., Diethelm, S., Blumstein, A.-C., Gauvin, J.-C., Jacob, L., Masse, F., Mathieu, G., Mirre, A., Schmitt, C., Enderlin-Paput, M., Lange, R., Bur, D., Tidten-Luksch, N., Gnerre, C., Seeland, S., Hermann, C., Locher, H.H., Seiler, P., Mac Sweeney, A., Hubschwerlen, C., Ritz, D., Rueedi, G.
+
Discovery of Novel Inhibitors of LpxC Displaying Potent In Vitro Activity against Gram-Negative Bacteria.,Surivet JP, Panchaud P, Specklin JL, Diethelm S, Blumstein AC, Gauvin JC, Jacob L, Masse F, Mathieu G, Mirre A, Schmitt C, Lange R, Tidten-Luksch N, Gnerre C, Seeland S, Herrmann C, Seiler P, Enderlin-Paput M, Mac Sweeney A, Wicki M, Hubschwerlen C, Ritz D, Rueedi G J Med Chem. 2019 Dec 5. doi: 10.1021/acs.jmedchem.9b01604. PMID:31804826<ref>PMID:31804826</ref>
-
Description: Structure of P. aeruginosa LpxC with compound 10: (2RS)-4-(5-(2-Fluoro-4-methoxyphenyl)-1-oxoisoindolin-2-yl)-N-hydroxy-2-methyl-2-(methylsulfonyl)butanamide
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Gauvin, J.-C]]
+
<div class="pdbe-citations 6i47" style="background-color:#fffaf0;"></div>
-
[[Category: Hubschwerlen, C]]
+
== References ==
-
[[Category: Specklin, J.-L]]
+
<references/>
-
[[Category: Jacob, L]]
+
__TOC__
-
[[Category: Schmitt, C]]
+
</StructureSection>
-
[[Category: Rueedi, G]]
+
[[Category: Large Structures]]
-
[[Category: Hermann, C]]
+
[[Category: Pseudomonas aeruginosa LESB58]]
-
[[Category: Enderlin-Paput, M]]
+
[[Category: Blumstein A-C]]
-
[[Category: Surivet, J.-P]]
+
[[Category: Bur D]]
-
[[Category: Bur, D]]
+
[[Category: Diethelm S]]
-
[[Category: Mirre, A]]
+
[[Category: Enderlin-Paput M]]
-
[[Category: Diethelm, S]]
+
[[Category: Gauvin J-C]]
-
[[Category: Seiler, P]]
+
[[Category: Gnerre C]]
-
[[Category: Tidten-Luksch, N]]
+
[[Category: Hermann C]]
-
[[Category: Mac Sweeney, A]]
+
[[Category: Hubschwerlen C]]
-
[[Category: Seeland, S]]
+
[[Category: Jacob L]]
-
[[Category: Lange, R]]
+
[[Category: Lange R]]
-
[[Category: Ritz, D]]
+
[[Category: Locher HH]]
-
[[Category: Mathieu, G]]
+
[[Category: Mac Sweeney A]]
-
[[Category: Locher, H.H]]
+
[[Category: Masse F]]
-
[[Category: Masse, F]]
+
[[Category: Mathieu G]]
-
[[Category: Blumstein, A.-C]]
+
[[Category: Mirre A]]
-
[[Category: Gnerre, C]]
+
[[Category: Panchaud P]]
-
[[Category: Panchaud, P]]
+
[[Category: Ritz D]]
 +
[[Category: Rueedi G]]
 +
[[Category: Schmitt C]]
 +
[[Category: Seeland S]]
 +
[[Category: Seiler P]]
 +
[[Category: Specklin J-L]]
 +
[[Category: Surivet J-P]]
 +
[[Category: Tidten-Luksch N]]

Current revision

Structure of P. aeruginosa LpxC with compound 10: (2RS)-4-(5-(2-Fluoro-4-methoxyphenyl)-1-oxoisoindolin-2-yl)-N-hydroxy-2-methyl-2-(methylsulfonyl)butanamide

PDB ID 6i47

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools