This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ywd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:08, 25 October 2023) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ywd.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of glutamine amidotransferase==
-
|PDB= 2ywd |SIZE=350|CAPTION= <scene name='initialview01'>2ywd</scene>, resolution 1.90&Aring;
+
<StructureSection load='2ywd' size='340' side='right'caption='[[2ywd]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[2ywd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YWD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YWD FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
|GENE= pdxT ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=274 Thermus thermophilus])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ywd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ywd OCA], [https://pdbe.org/2ywd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ywd RCSB], [https://www.ebi.ac.uk/pdbsum/2ywd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ywd ProSAT], [https://www.topsan.org/Proteins/RSGI/2ywd TOPSAN]</span></td></tr>
-
|DOMAIN=
+
</table>
-
|RELATEDENTRY=
+
== Function ==
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ywd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ywd OCA], [http://www.ebi.ac.uk/pdbsum/2ywd PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2ywd RCSB]</span>
+
[https://www.uniprot.org/uniprot/PDXT_THET8 PDXT_THET8] Involved in the hydrolysis of glutamine to glutamate and ammonia. Channels an ammonia molecule to PdxS (By similarity).
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''Crystal structure of glutamine amidotransferase'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yw/2ywd_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
2YWD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YWD OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: Thermus thermophilus]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ywd ConSurf].
-
[[Category: Ebihara, A.]]
+
<div style="clear:both"></div>
-
[[Category: Kuramitsu, S.]]
+
__TOC__
-
[[Category: Manzoku, M.]]
+
</StructureSection>
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[[Category: Large Structures]]
-
[[Category: Yokoyama, S.]]
+
[[Category: Thermus thermophilus HB8]]
-
[[Category: national project on protein structural and functional analyse]]
+
[[Category: Ebihara A]]
-
[[Category: nppsfa]]
+
[[Category: Kuramitsu S]]
-
[[Category: pyridoxine biosynthesis]]
+
[[Category: Manzoku M]]
-
[[Category: riken structural genomics/proteomics initiative]]
+
[[Category: Yokoyama S]]
-
[[Category: rsgi]]
+
-
[[Category: structural genomic]]
+
-
[[Category: transferase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:16:01 2008''
+

Current revision

Crystal structure of glutamine amidotransferase

PDB ID 2ywd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools