2yxx
From Proteopedia
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| - | [[Image:2yxx.gif|left|200px]] | ||
| - | + | ==Crystal structure analysis of Diaminopimelate decarboxylate (lysA)== | |
| - | + | <StructureSection load='2yxx' size='340' side='right'caption='[[2yxx]], [[Resolution|resolution]] 1.70Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | | | + | <table><tr><td colspan='2'>[[2yxx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima_MSB8 Thermotoga maritima MSB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YXX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YXX FirstGlance]. <br> |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yxx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yxx OCA], [https://pdbe.org/2yxx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yxx RCSB], [https://www.ebi.ac.uk/pdbsum/2yxx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yxx ProSAT], [https://www.topsan.org/Proteins/RSGI/2yxx TOPSAN]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Function == | |
| - | + | [https://www.uniprot.org/uniprot/DCDA_THEMA DCDA_THEMA] Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine (By similarity).[HAMAP-Rule:MF_02120] | |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | + | Check<jmol> | |
| - | + | <jmolCheckbox> | |
| - | == | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yx/2yxx_consurf.spt"</scriptWhenChecked> |
| - | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | |
| - | + | <text>to colour the structure by Evolutionary Conservation</text> | |
| - | [[Category: | + | </jmolCheckbox> |
| - | [[Category: Thermotoga maritima]] | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yxx ConSurf]. |
| - | [[Category: Bessho | + | <div style="clear:both"></div> |
| - | [[Category: Nakamura | + | __TOC__ |
| - | [[Category: Padmanabhan | + | </StructureSection> |
| - | + | [[Category: Large Structures]] | |
| - | [[Category: Yokoyama | + | [[Category: Thermotoga maritima MSB8]] |
| - | + | [[Category: Bessho Y]] | |
| - | + | [[Category: Nakamura Y]] | |
| - | + | [[Category: Padmanabhan B]] | |
| - | + | [[Category: Yokoyama S]] | |
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Current revision
Crystal structure analysis of Diaminopimelate decarboxylate (lysA)
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